BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944549

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33730.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   826    0.0  


> AT4G33730.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr4:16185098-16185616 FORWARD LENGTH=519
Length=519

 Score =  826 bits (447),  Expect = 0.0
 Identities = 497/521 (95%), Gaps = 4/521 (1%)
 Strand=Plus/Plus

Query  21   ATGTTTCATAAGGTTGCTATTGAAACCTTGGTTCTCCTACTTCTCATCAATTACTTGACA  80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTTCATAAGGTTGCTATTGAAACCTTGGTTCTCCTACTTCTCATCAATTACTTGACA  60

Query  81   CAAATCGATGTTTCTTCCGCACAATACTCTCAGTATCCTCAGTCCCATGAATCTCCTGAC  140
            |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  61   CAAATCGATGTTTCCTCCGCACAATACTCTCAGTATCCTCAGTCCCATGAATATCCTGAC  120

Query  141  AGCTACCTTAGACCCCATAACGCAGCCCGAGCCGCGGTCAAAGTCAGGCCTCTAAGATGG  200
            ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct  121  AGCTACCTTAGACCCCACAACGCAGCCCGAGCCGCGGTCAAAGTCAAGCCTCTAAGATGG  180

Query  201  GACTTCGGTATAGCCACTGTGGCTCAGGACTACGCAAACCAACTAGCCGCCGGTTCC-TG  259
            || |||||||||||||||||||||||||||||||||||||| |||||| | ||| || ||
Sbjct  181  GATTTCGGTATAGCCACTGTGGCTCAGGACTACGCAAACCATCTAGCCTCAGGT-CCATG  239

Query  260  CAGTCTTGAACATTCCTCTGGACCATATGGAGAGAATCTTGCATTTGGCAGTGGAGACAT  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CAGTCTTGAACATTCCTCTGGACCATATGGAGAGAATCTTGCATTTGGCAGTGGAGACAT  299

Query  320  GTCGGCGGCTCAGGCGGTTGCAATGTGGGTAGATGAGAAGTCGTACTATGATTTTTACTC  379
            |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct  300  GTCGGCCGCTCAGGCGGTTGCGATGTGGGTACATGAGAAGTCGTACTATGATTTTTACTC  359

Query  380  AAACTCGTGCCACGGACCGGCTTGTGGACACTACACACAGGTCGTGTGGCGTGGCTCAGC  439
            |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  360  AAACTCGTGCCATGGTCCGGCTTGTGGACACTACACGCAGGTCGTGTGGCGTGGCTCAGC  419

Query  440  TCGGCTCGGTTGTGGTAAGGCTAAGTGTAATAATGGTGCAAGTATTGTCGTGTGTAACTA  499
            ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  420  TCGTCTCGGTTGTGGTAAGGCTAAGTGTAATAATGGTGCCAGTATTGTTGTGTGTAACTA  479

Query  500  TGACCCTGCAGGCAATTATATTGGTA-CTAAACCATATTGA  539
            |||||| ||||||||||| ||||| | ||| ||||||||||
Sbjct  480  TGACCCCGCAGGCAATTACATTGG-AGCTAGACCATATTGA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5