BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944565
Length=2376
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33620.1 | Symbols: | Cysteine proteinases superfamily prot... 1866 0.0
AT1G55980.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 255 1e-66
> AT4G33620.1 | Symbols: | Cysteine proteinases superfamily protein
| chr4:16147692-16152853 FORWARD LENGTH=2352
Length=2352
Score = 1866 bits (1010), Expect = 0.0
Identities = 1173/1253 (94%), Gaps = 6/1253 (0%)
Strand=Plus/Plus
Query 21 ATGAGTCTCCGCTCAGTTCAATCTCGCAGTAAGCGGAAGCCGCTTGCA-GTATTCGATTA 79
|||| |||||| ||||||||||| || ||||||||||| ||| ||| | ||||| |||||
Sbjct 1 ATGACTCTCCGGTCAGTTCAATCCCGAAGTAAGCGGAAACCGATTG-ATGTATTTGATTA 59
Query 80 CACTGACGAGGAAGAACGTATTGAAAAGGTGTCGAAGAAACTCCTTCGCAAATTCGATTC 139
| |||||||||| || ||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 60 CTCTGACGAGGATGACCGTGTTGAAGAGGAGTCGAAGAAACTCCTTCGCAAATTCGATTC 119
Query 140 CCCAGTTACTGAAAAAAC-CTCA-TGCGCCATCGATAAGTATGACTTCCTTCGATGTTTT 197
|||||||||| ||||||| | || |||||||||||||||||||| ||||||||||| |||
Sbjct 120 CCCAGTTACT-AAAAAACAC-CACTGCGCCATCGATAAGTATGAATTCCTTCGATGCTTT 177
Query 198 GCGCAGAAAACCCAAGGCGAGAGTAAAGAACTGGACCACATTGTCATTGATGCTGAAGTC 257
||| || | |||||| |||||||||||| | || | |||||||| ||||||| |||||||
Sbjct 178 GCGAAGGATACCCAAAGCGAGAGTAAAGTATTGCAACACATTGTTATTGATGTTGAAGTC 237
Query 258 CCAGCAAAAGAAGAACCGTCAAGGTGTGAACTCAGCGGAGATGGCACTATTGACCTGATT 317
|||| |||||||||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 238 CCAGTAAAAGAAGAACCGTCAAGATGTGAACTCAGCGGAGATGGAAATAGTGACCTGATT 297
Query 318 GACGTAATCTCCAAAGGCTCCCATGGAAGCATTGGAGTCGATTCATCAACTTCATCATCT 377
|| || |||||||| ||||||||| |||| |||||| ||||||||| ||| |||||||||
Sbjct 298 GATGTTATCTCCAATGGCTCCCATAGAAGGATTGGAATCGATTCATTAACGTCATCATCT 357
Query 378 CTGTCGGAAAATGATGAAGCTTCAACTGGAGAAGCCACAAATCCTGCTCCTGATCCACAT 437
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 358 CTGTCGGAAAATGATGAAGTTTCAACTGGAGAAGCCACAAATCCTGCTTCTGATCCACAT 417
Query 438 GAAGTTGATCCAGAGAATGCACAAGTTCTTATTATCCCTGATGTTATTATATATGGAGAT 497
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAAGTTGATCCCGAGAATGCACAAGTTCTTATTATCCCTGATGTTATTATATATGGAGAT 477
Query 498 ATCTACTGTACAAACTCGAAGTTAACATTTTCACGCAACTGTATCAGCGTTGAAAGTTCA 557
|| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 478 ATATACTGTACAAACTCGAAGTTAACATTTTCACGCAACTGTATGAATGTTGAAAGTTCT 537
Query 558 TCAGTTAATGCAACTAAAGGGACCTTTAGTTCTCAGTGGACAATAGAAGATATCATCAAA 617
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 TCAGTAAATGCAACTAAAGGGACCTTTAGTTGTCAGTGGACAATAGAAGATATCATCAAA 597
Query 618 ATTGAGTCTCAGTGGTGTTTAGAGGTTGAGACTGCCTTTGTCAACGTCCTTCTTAAGTCC 677
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 598 ATTGAGTCTCAGTGGTGTTTAGAGGTTGAGACTGCCTTTGTTAACGTCCTTCTGAAGTCC 657
Query 678 AGGGAGCCTGAAGGAGTTCACAGTGCAAAAGATATTTCAGGAATTGATCTCCTAAAATTT 737
||| |||||||||||||| | | ||| |||||||||||||||||||||||||||||||||
Sbjct 658 AGGAAGCCTGAAGGAGTTGATATTGCGAAAGATATTTCAGGAATTGATCTCCTAAAATTT 717
Query 738 TCCGTGTATGACCCTAAATGGTCTAAAGAAGTAGACACCATCAAATCACTGGACTCGAGA 797
||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 718 TCCGTGTATGACCCTAAATGGTCTAAAGAAGTAGAAACCATCAGATCGTTGGACTCGAGA 777
Query 798 TACAAGAATATTTGGTTTGACACCATAACCGAAAGCGAGGAAAGTGTTTTTAGTGGACAT 857
||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||
Sbjct 778 TACAAGAATATTTGGTTTGACACCATAACAGAGAGCGAGGAAATTGCTTTTAGTGGACAT 837
Query 858 GATTTGGGAACTTCACTCACCAATCTCGCTGATTCCTTTGAAGATCTAGTCTACCCCCAA 917
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 838 GATTTGGGAACTTCACTCACCAACCTCGCTGATTCATTTGAAGATCTAGTTTACCCTCAA 897
Query 918 GGAGAGCCAGATGCTGTAGTAGTTAGGAAGCAAGATATTGAGCTTCTGAAGCCAAGGCGT 977
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 898 GGAGAGCCAGATGCTGTAGTAGTTAGGAAGCAAGACATTGAGCTTCTGAAGCCAAGACGT 957
Query 978 TTCATCAACGATACAATCATTGATTTTTATATCAAGTACCTTAAGAATCGAATTCCACCG 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 TTCATCAACGATACAATCATTGATTTTTATATCAAGTACCTTAAGAATCGAATTTCACCG 1017
Query 1038 AAGGAACGGGGCAGATTCCACTTTTTCAATTGTTTCTTTTTCCGTAAGTTGGCTAACTTA 1097
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1018 AAGGAACGGGGCAGATTCCACTTTTTCAATTGTTTCTTTTTCCGGAAGCTGGCTAACTTA 1077
Query 1098 GACAAAGGTACACCTAGCACGTGTGGAGGAAGGGAAGCATACCAACGTGTGCAGAAGTGG 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GACAAAGGTACACCTAGCACGTGTGGAGGAAGGGAAGCATACCAACGTGTGCAGAAGTGG 1137
Query 1158 ACTAAGAATGTGGAACTTTTTGAAAAAGATTATATATTTATTCCTATAAACTGCAGTTTT 1217
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACTAAGAATGTGGATCTTTTTGAAAAAGATTATATATTTATTCCTATAAACTGCAGTTTT 1197
Query 1218 CACTGGAGTCTGATTATCATCTGTCATCCCGGTGAATTGGTTCCTTCTCATGT 1270
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CACTGGAGTCTGGTTATCATCTGTCATCCCGGTGAATTGGTTCCTTCTCATGT 1250
Score = 1592 bits (862), Expect = 0.0
Identities = 1018/1091 (93%), Gaps = 19/1091 (2%)
Strand=Plus/Plus
Query 1269 GTCGAAAACCCAAAAAGGGTTCCCTGCATCTTGCATCTGGACTCAATTAAAGGAAGCCAC 1328
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GTCGAAAACCCACAAAGGGTTCCCTGCATCTTGCATCTGGACTCAATTAAAGGAAGCCAC 1335
Query 1329 AAAGGTGGTCTTATAAACATTTTTCCGAGTTACCTACGTGAAGAGTGGAAAGCGAGGCAT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 AAAGGTGGTCTTATAAACATTTTTCCGAGTTACCTACGTGAAGAGTGGAAAGCGAGGCAT 1395
Query 1389 GGAAACACAACAA-TAGATTCCCCAAGAGCTCCAGATATGCTGTCCATCTCACTTGAGCT 1447
| ||||||||||| | |||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 1396 GAAAACACAACAAAT-GATTCCTCAAGAGCTCCAAATATGCAGTCCATCTCACTTGAGCT 1454
Query 1448 CCCGCAGCAAGAGAATTCATTTGACTGTGGCCTCTTTTTGCTCCACTATCTGGATCTTTT 1507
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1455 CCCGCAGCAAGAGAATTCTTTTGACTGTGGCCTCTTTTTGCTCCACTATTTGGATCTTTT 1514
Query 1508 TGTGGCTCAAGCTCCTGCTAAATTTAACCCATCCCTCATCACAAGATCGGCAAATTTTCT 1567
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||
Sbjct 1515 TGTGGCTCAAGCTCCTGCTAAATTCAATCCATCCCTCATCTCAAGATCGGCAAATTTTCT 1574
Query 1568 AACTAGGAATTGGTTTCCTGCGAAAG-AAGCTTCACTTAAGCGTAGATACATCTTAGAAT 1626
||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||
Sbjct 1575 AACTAGGAATTGGTTTCCTGC-AAAGGAAGCTTCACTTAAGCGTAGAAACATCTTAGAAT 1633
Query 1627 TGCTTTACAATCTCCACAAAGGTCATGATCCAAGTATTCTTCCAGCTAATTCCAAAAGTG 1686
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 TGCTTTACAACCTCCACAAAGGTCATGATCCAAGTATTCTTCCAGCTAATTCCAAAAGTG 1693
Query 1687 AACCACCTCATTGTGGAGTTTCCAACAAGAATGATCAAGAAAGTGAAAGTGAGAATGTGA 1746
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1694 AACCACCTCATTGTGGAGTTTCCAACAGGAATGATCAAGAAACTGAAAGTGAGAATGTGA 1753
Query 1747 TTGAGAGCTGTAACTGGAGAAAACCATTTGATTGTTCCTCGTCAACCGTTACAGACATTC 1806
||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1754 TTGAGTGCTGTAACTGGATAAAACCATTTGATGGTTCCTCATCAACCGTTACAGACATTT 1813
Query 1807 CCCAAACAAAGACTTGCTCGCCAGATCTGATTCTTAGCAAAGAAACTTT-TTAC-GCAGG 1864
||||||| |||||||||||||| ||||||||||||||||||||| ||| |||| || ||
Sbjct 1814 CCCAAACGAAGACTTGCTCGCCGGATCTGATTCTTAGCAAAGAAG-TTTCTTACAGC-GG 1871
Query 1865 AGGTTATGACCCTCAGTCATCTAAGCTCCGAAAGATCTTTATGTCGCCTATTGTGGAAGA 1924
|||||||||||||| ||| ||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 1872 AGGTTATGACCCTCCGTCTTCTAAGCTCCGAAAGGTCTTCATGTCACCTATTGTGGAAGA 1931
Query 1925 AGTGCAAGAAAGTGGTGAGaaaaaaaaCGATATGGCAATGGACATACAGGAATCTACTGG 1984
||||||||||||| |||||||||| || || ||| ||||||||||||| |||| |||||
Sbjct 1932 AGTGCAAGAAAGTTGTGAGAAAAAGGACCATTTGGAAATGGACATACAGAAATCCACTGG 1991
Query 1985 TCACGAGATAGAGACATTGC-AAAATGAGGAATGCCTGCTTTATATTGAGGACAGTGATG 2043
||| |||||||| ||||||| |||| |||| |||| ||||||||||||||||||||||||
Sbjct 1992 TCATGAGATAGAAACATTGCGAAAA-GAGGGATGCATGCTTTATATTGAGGACAGTGATG 2050
Query 2044 ATGAAGAAGCTGTTTCAGTAGAATACGTCTCTGATTCTCAAGATTCATATGAAGTTGAGA 2103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 ATGAAGAAGCTGTTTCAGTAGAATACGTCTCTGATTCTCAAGATTCATATGAAGTTGAGA 2110
Query 2104 TGAAAGGAGAAGATGATGATGACGATGAGCTTATAGTTACTGGAGAATCCGCAGGGACTC 2163
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2111 TGAAAGTAGAAGATGATGATGACGATGAGCTTATAGTTACTGGAGAATCTTCAGGGATTC 2170
Query 2164 ATAGAAGCAGAGAAATCAAGTCTGATTCTGTATCGATCGAAAAAGGAGTGAACAAGAGTA 2223
|| ||||||||||||||||||||||||| | ||||||||||| | ||||||||| ||||
Sbjct 2171 ATGGAAGCAGAGAAATCAAGTCTGATTCAGCATCGATCGAAA--G-AGTGAACAAAAGTA 2227
Query 2224 GAGATTCAACTGCTGCTTCTTGTTATAATGACCTTCTTCTTGTGTTGTCTGATGATGAGA 2283
|||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2228 GAGATTCAACTGCTGCCTCTTGTTATAATGACTTTCTTCTTGTGTTATCTGATGATGAGA 2287
Query 2284 GAAGCTCAGAAGACAAAGAAAACTTCTTAATCACAAGTTCAAATGTAATGGCCAAAAAGC 2343
| |||||||| |||||||||||| ||||||| | | |||||||||| |||||||| ||
Sbjct 2288 GGAGCTCAGACGACAAAGAAAACATCTTAAT-A-A-GTTCAAATGTGATGGCCAA---GC 2341
Query 2344 CAAAAACTTGA 2354
|||||||||||
Sbjct 2342 CAAAAACTTGA 2352
> AT1G55980.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr1:20938899-20941813 REVERSE LENGTH=1401
Length=1401
Score = 255 bits (138), Expect = 1e-66
Identities = 225/265 (85%), Gaps = 13/265 (5%)
Strand=Plus/Plus
Query 196 TTGCGCAGAAAACCC-AAGGCGAGAGTAAAGAACTGGACCACATTGTCATTGATGCTGAA 254
||||| || | |||| |||| |||||||||| | || | ||||| || ||||||| ||||
Sbjct 113 TTGCGAAGGATACCCAAAGG-GAGAGTAAAGTATTGCAACACATAGTTATTGATGTTGAA 171
Query 255 GTCCCAGCAAAAGAAGAACCGTCAAGGTGTGAACTCAGCGGAGATGGCACTATTGACCTG 314
||||||| ||| |||||||||||||| |||||||||||||||||||| | || |||||||
Sbjct 172 GTCCCAGTAAATGAAGAACCGTCAAGATGTGAACTCAGCGGAGATGGAAATAGTGACCTG 231
Query 315 ATTGACGTAATCTCCAAAGGCTCCCATGGAAGCATTGG-AGTCGATTCATCAACTTCATC 373
|||| | | | | |||||||||||| ||||| | ||||||||||||| |||||
Sbjct 232 GTTGA--T-GT-T----A-TCTCCCATGGAAGGATTGGTA-TCGATTCATCAACGTCATC 281
Query 374 ATCTCTGTCGGAAAATGATGAAGCTTCAACTGGAGAAGCCACAAATCCTGCTCCTGATCC 433
|||| || ||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 282 ATCTTTGACGGAAAATGATGAAGTTTCAACTGGAGAAGCCACAAATCCTGCTTCTGATCC 341
Query 434 ACATGAAGTTGATCCAGAGAATGCA 458
|||||||||||| || |||||||||
Sbjct 342 ACATGAAGTTGAACCCGAGAATGCA 366
Score = 100 bits (54), Expect = 5e-20
Identities = 103/124 (83%), Gaps = 13/124 (10%)
Strand=Plus/Plus
Query 21 ATGAGTCTCCGCTCAGTTCAATCTCGCAGTAAGCGGAAGCCGCTTGCA-GTATTCGATTA 79
|||| |||||| ||||||||||| |||||||||||||| ||| ||| | |||||||||||
Sbjct 1 ATGACTCTCCGGTCAGTTCAATCCCGCAGTAAGCGGAAACCGATTG-ATGTATTCGATTA 59
Query 80 CACTGACGAGGAAGAACGTATTGAAAAGGTGTCGAAGAAACTCCTTCGCAAATTCGATTC 139
| |||||||||| || || | || | |||||||||||||||||||||||||||
Sbjct 60 CTCTGACGAGGATGACCG---T------GT-T-GAAGAAACTCCTTCGCAAATTCGATTC 108
Query 140 CCCA 143
||||
Sbjct 109 CCCA 112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117971280750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5