BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944569

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33585.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   645    0.0  


> AT4G33585.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 3456 Blast hits to 2147 proteins in 337 species: 
Archae - 4; Bacteria - 491; Metazoa - 997; Fungi - 201; 
Plants - 1105; Viruses - 207; Other Eukaryotes - 451 (source: 
NCBI BLink). | chr4:16141535-16142310 REVERSE LENGTH=776
Length=776

 Score =  645 bits (349),  Expect = 0.0
 Identities = 430/469 (92%), Gaps = 6/469 (1%)
 Strand=Plus/Plus

Query  1    AGAGCTCTTTTATT-AACACTATGGCTTCATCTAAAATCTTCTTCGTCGCTTCTCTCCTC  59
            |||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct  33   AGAGCTCTTTTATTAAACACTATGGCCTCATCTAAAATGTTCTTAGTCGCTTCTCTCCTC  92

Query  60   ATAGCTCTGATGTTCCCCTCCATGATCACTTCAAGCCGCGCCGCACAACAATTTACGGAG  119
            || |||||||||||| |||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct  93   ATGGCTCTGATGTTCTCCTCTATGATCACTTCAAGCCGCGCTGCACAACAATTTACGAAG  152

Query  120  AAACAAACGTTAAAACCGAAATTTTTTAGACCCCGTTTCCCTCAATTTCCTAGACCCGGC  179
            |||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||
Sbjct  153  AAACAAACGTTAAAACCGAAGTATTTTAGACCGCGTTTCCCTCAATTTCCGAGACCCGGC  212

Query  180  TTTCC-AAGCAATCCAACAGTACCCAGTTTTCCTCAGTTTCCAAGACCCAGTTTTCCAAC  238
            ||||| || ||||||| || ||||||||||||||||||| ||||||||| ||||||||||
Sbjct  213  TTTCCGAA-CAATCCAGCATTACCCAGTTTTCCTCAGTTCCCAAGACCCGGTTTTCCAAC  271

Query  239  TAATCCTATGCCGTTCCCTCAATTTCCGAGACCCGGTTTTCCGAGCAATCCTACACCCG-  297
            |||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||| 
Sbjct  272  TAATCCCATGCCTTTCCCTCAATTCCCTAGACCCGGTTTTCCGAGCAATCCTACACCCGA  331

Query  298  GTTTTCCTCAGTTTCCGGGGCAAGGTTTTCCAAAATTCCCATTCCCATCTCCTTTCCCTC  357
            |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct  332  GTTT-CCTCAGTTTCCGGGGCAAAGTTTTCCAAAATTCCCATTCTCATCTCCTTTCTCTC  390

Query  358  AATTTCCGAAACCCGCAACGCCTGGATCGCCCGCTCCGCCCCTCTCTACTCCCCCCTCTC  417
            ||| |||||| ||||||| |||||||||||||| | || |||||||| ||||||| ||||
Sbjct  391  AATATCCGAAGCCCGCAATGCCTGGATCGCCCGTTACGGCCCTCTCTGCTCCCCC-TCTC  449

Query  418  TCCCTGCAACTCCGACTTCCATCCCTTGAGTTGTCTCCTCCAAACTTAA  466
            |||||| |||||| ||||||||||||| |||||||||||||||||||||
Sbjct  450  TCCCTGGAACTCCAACTTCCATCCCTTAAGTTGTCTCCTCCAAACTTAA  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22153258827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5