BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944569 Length=466 Score E Sequences producing significant alignments: (Bits) Value AT4G33585.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 645 0.0 > AT4G33585.1 | Symbols: | unknown protein; LOCATED IN: endomembrane system; Has 3456 Blast hits to 2147 proteins in 337 species: Archae - 4; Bacteria - 491; Metazoa - 997; Fungi - 201; Plants - 1105; Viruses - 207; Other Eukaryotes - 451 (source: NCBI BLink). | chr4:16141535-16142310 REVERSE LENGTH=776 Length=776 Score = 645 bits (349), Expect = 0.0 Identities = 430/469 (92%), Gaps = 6/469 (1%) Strand=Plus/Plus Query 1 AGAGCTCTTTTATT-AACACTATGGCTTCATCTAAAATCTTCTTCGTCGCTTCTCTCCTC 59 |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 33 AGAGCTCTTTTATTAAACACTATGGCCTCATCTAAAATGTTCTTAGTCGCTTCTCTCCTC 92 Query 60 ATAGCTCTGATGTTCCCCTCCATGATCACTTCAAGCCGCGCCGCACAACAATTTACGGAG 119 || |||||||||||| |||| |||||||||||||||||||| ||||||||||||||| || Sbjct 93 ATGGCTCTGATGTTCTCCTCTATGATCACTTCAAGCCGCGCTGCACAACAATTTACGAAG 152 Query 120 AAACAAACGTTAAAACCGAAATTTTTTAGACCCCGTTTCCCTCAATTTCCTAGACCCGGC 179 |||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||| Sbjct 153 AAACAAACGTTAAAACCGAAGTATTTTAGACCGCGTTTCCCTCAATTTCCGAGACCCGGC 212 Query 180 TTTCC-AAGCAATCCAACAGTACCCAGTTTTCCTCAGTTTCCAAGACCCAGTTTTCCAAC 238 ||||| || ||||||| || ||||||||||||||||||| ||||||||| |||||||||| Sbjct 213 TTTCCGAA-CAATCCAGCATTACCCAGTTTTCCTCAGTTCCCAAGACCCGGTTTTCCAAC 271 Query 239 TAATCCTATGCCGTTCCCTCAATTTCCGAGACCCGGTTTTCCGAGCAATCCTACACCCG- 297 |||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 272 TAATCCCATGCCTTTCCCTCAATTCCCTAGACCCGGTTTTCCGAGCAATCCTACACCCGA 331 Query 298 GTTTTCCTCAGTTTCCGGGGCAAGGTTTTCCAAAATTCCCATTCCCATCTCCTTTCCCTC 357 |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 332 GTTT-CCTCAGTTTCCGGGGCAAAGTTTTCCAAAATTCCCATTCTCATCTCCTTTCTCTC 390 Query 358 AATTTCCGAAACCCGCAACGCCTGGATCGCCCGCTCCGCCCCTCTCTACTCCCCCCTCTC 417 ||| |||||| ||||||| |||||||||||||| | || |||||||| ||||||| |||| Sbjct 391 AATATCCGAAGCCCGCAATGCCTGGATCGCCCGTTACGGCCCTCTCTGCTCCCCC-TCTC 449 Query 418 TCCCTGCAACTCCGACTTCCATCCCTTGAGTTGTCTCCTCCAAACTTAA 466 |||||| |||||| ||||||||||||| ||||||||||||||||||||| Sbjct 450 TCCCTGGAACTCCAACTTCCATCCCTTAAGTTGTCTCCTCCAAACTTAA 498 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22153258827 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5