BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944570
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5... 1535 0.0
> AT4G33580.2 | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase
5 | chr4:16138360-16141624 FORWARD LENGTH=1361
Length=1361
Score = 1535 bits (831), Expect = 0.0
Identities = 916/957 (96%), Gaps = 5/957 (1%)
Strand=Plus/Plus
Query 1 CTTTACTCTCTAGAGCTCTTTCATGGCAGCTACTCCCACTCACTTCTCTGTCTCCCATGA 60
|||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 170 CTTTACTCTCTAGACCTTTTTCATGGCAGCCACTCCCACACACTTCTCTGTCTCCCATGA 229
Query 61 TCCTTCTTCTTCCACGTCTCTCCTTAATCTGCAAACCCAAGCGATCTTTGGTCCCAAGCA 120
||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 230 TCCTTTTTCTTCCACGTCTCTCCTTAATCTCCAAACTCAAGCGATCTTTGGTCCCAATCA 289
Query 121 CAATTTAAAGGA-AACCCAGTTGAGAATTCCAGCTTCTTTCAGAAGAAAAGATTTAAACT 179
|| |||||| || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 290 CAGTTTAAA-GACAACCCAGTTGAGAATTCCAGCTTCTTTCAGAAGAAAAGCTACAAACT 348
Query 180 TGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTAATGGGGTTGCAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TGCAAGTGATGGCTTCAGGAAAGACACCTGGACTGACTCAGGAAGCTAATGGGGTTGCAA 408
Query 240 TTAATAGACAAAATGACAATGATGTATTTGACGACATGAAACAGCGGTTCCTCGCCTTCA 299
|| |||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 409 TTGATAGACAAAACAACACTGATGTATTTGACGACATGAAACAGCGGTTCCTGGCCTTCA 468
Query 300 AGAAGCATAAGTACAT---GGATAACTTTGATCACTACAAAAATTTGGCAGATGCTCAAG 356
|||||| ||||||||| |||| ||||||| |||||||||||| |||||||||||||||
Sbjct 469 AGAAGCTTAAGTACATCAGGGATGACTTTGAACACTACAAAAATCTGGCAGATGCTCAAG 528
Query 357 CTCCAAAGTTTCTGGTGATTGCTTGTGCAGACTCTAGGGTTTGTCCTTCTGCTGTCCTGG 416
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 529 CTCCAAAGTTTCTGGTGATTGCTTGTGCAGACTCTAGAGTTTGTCCTTCTGCTGTCCTGG 588
Query 417 GATTCCAACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTAGTACCTTCATTTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 589 GATTCCAACCGGGTGACGCATTCACTGTTCGTAACATTGCAAATTTAGTACCTCCATATG 648
Query 477 AGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAATACTCTTAATGTGG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGTCTGGACCTACTGAAACCAAAGCTGCTCTAGAGTTCTCTGTGAATACTCTTAATGTGG 708
Query 537 AAAACATCTTAGTCATTGGTCATAGCCGCTGTGGAGGAATTCAAGCTTTAATGAAAATGG 596
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 709 AAAACATCTTAGTCATTGGTCATAGCCGGTGTGGAGGAATTCAAGCTTTAATGAAAATGG 768
Query 597 AAGACGAAGTAGACTCCAGAAGTTTCATACAAAACTGGGTAGTTGTGGGGAAGAAGGCAA 656
||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 769 AAGACGAAGGAGATTCCAGAAGTTTCATACACAACTGGGTAGTTGTGGGAAAGAAGGCAA 828
Query 657 AGGAAAGCACAAAAGCTGTTGCTTCAAACCTCCATTTTGATAATCAGTGCCAACATTGTG 716
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 AGGAAAGCACAAAAGCTGTTGCTTCAAACCTCCATTTTGATCATCAGTGCCAACATTGTG 888
Query 717 AAAAGGCGTCTATAAATCATTCATTAGAAAGGCTGCTTGGTTACCCGTGGATAGAAGAGA 776
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 889 AAAAGGCATCGATAAATCATTCATTAGAAAGGCTGCTTGGGTACCCGTGGATAGAAGAGA 948
Query 777 AAGTGCGGCAAGGGTCACTGTCTCTCCATGGTGGGTACTATAATTTTGTTGATTGTACAT 836
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 949 AAGTGCGGCAAGGTTCACTGTCTCTCCATGGTGGATACTATAATTTTGTTGATTGTACGT 1008
Query 837 TCGAGAAATGGACAGTGGATTATGCAGCAAGCAGAGGTAAGAAGAAGGAAGGCAGTGGAA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TCGAGAAATGGACAGTGGATTATGCAGCAAGCAGAGGTAAGAAGAAGGAAGGCAGTGGAA 1068
Query 897 TCGCTGTTAAAGACCGGTCAGTTTGGTCTTGACTTACGACTATCTCAATCTTCATAG 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TCGCTGTTAAAGACCGGTCAGTTTGGTCTTGACTTACGACTATCTCAATCTTCATAG 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5