BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944585
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 ... 2017 0.0
> AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14
| chr4:16102595-16105493 REVERSE LENGTH=1505
Length=1505
Score = 2017 bits (1092), Expect = 0.0
Identities = 1229/1297 (95%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 1 CTTGAGGGGAACTCCTGTCCATGGCGCTAGTTGTCCGACCACTCTTTGTTCCTGGAAGTG 60
|||||||| ||||| |||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 41 CTTGAGGGAAACTCATGTCCATGGCGCTAATTGTCCGGCCATTCTTTGTTCCTGGAAGTG 100
Query 61 CTGGGATTTCTGGGACTAGAGACATATGCAAGAAAAATCAGTCGAGGAAGTATCTTTTGA 120
|||| |||||||||| |||| ||||||||||||||||||| | ||||||||||||| |||
Sbjct 101 CTGGAATTTCTGGGAGTAGAAACATATGCAAGAAAAATCAATGGAGGAAGTATCTTCTGA 160
Query 121 AACCCAATGGAGCTTCCGTTAATTGCTCATTTAGTACAGAGAAGGATCCTCTCTTACCGT 180
|||||| |||| | ||| |||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 161 AACCCAGTGGATCATCCATTAATTGCTCATTTAGTACAGAGAAGAATCCTCTATTACCAT 220
Query 181 CTATCCAGCAGTTAACCGATGCTCGTCTCATATATAGTGTATCTGCAGCATTGGGTCATA 240
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 221 CTATCCAGCAGTTAGCCGATGCTCGTCTCATATACAGTGTATCTGCAGCATTGGGTCATA 280
Query 241 ACAAGGAATCACATCCAGAATGCAGCGCAAGAGTTCCTGCCATTGTTAATGCTCTTGCGA 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 281 ACAAGGAATCACATCCAGAATGCAGCGCTAGAGTTCCTGCCATTGTTAATGCTCTCGAGA 340
Query 301 AGAATGAGCTCACTCCTAAGTTCCGTGGCTCACAGATTCTTGAACTCGCAAATTTCAAGA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TGAATGAGCTCACTCCTAAGTTCCGTGGCTCACAGATTCTTGAACTCGCAAATTTCAAGA 400
Query 361 CTGCAACTATAGAAGACATTGCAAATGTTCACGACAAGGCTTATGTCTTTGGCCTAGAGA 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 401 CTGCAACTGTAGAAGACATTGCAAATGTTCACGACAAGGCTTATGTCTTTGGCCTAGAAA 460
Query 421 AGGCAATGGATGAGGCTTCAGATTCGGGGCTAATATTCATCGAAGGATCTGGACCAACAT 480
|||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||
Sbjct 461 AGGCAATGGATGAGGCTTCAGATTCGGGACTAATTTTCATTGAAGGCTCTGGACCAACAT 520
Query 481 ATGCCACTTCAACGACATTCCAAGATTCACTTATCGCAGCAGGAGCCGGAATGGCTTTAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 ATGCCACTTCAACGACATTCCAAGATTCACTTATCGCAGCAGGAGCCGGAATGGCTTTAG 580
Query 541 TTGATTCAGTGATAGCAGCATCCAGAAACAGCCCAGATCCACCCACTGGTTTTGCATTGA 600
||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 581 TTGATTCAGTGATCGCAGCATCCAGAAACAGCGTAGATCCACCCATTGGTTTTGCATTGA 640
Query 601 TAAGACCTCCAGGACACCACGCCGTGCCAAAAGGTCCAATGGGGTTCTGCGTTTTTGGTA 660
|||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 641 TAAGACCTCCTGGGCACCACGCCGTGCCAAAAGGTCCGATGGGGTTCTGTGTTTTTGGTA 700
Query 661 ATGTGGCAATCGCAGCTCGTCACGCCCAACGCACACATGGTCTGAAGCGCGTCTTCATAA 720
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 701 ATGTGGCAATCGCAGCTCGTCATGCCCAACGCACACATGGTCTGAAGCGCATCTTCATAA 760
Query 721 TTGACTTTGATGTTCACCACGGGAATGGCACAAATGATGCATTTTCTGAGGACCCTGATA 780
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 761 TTGACTTCGATGTTCACCACGGGAATGGCACAAATGATGCATTTACTGAGGACCCTGATA 820
Query 781 TATTCTTTTTGTCAACTCATCAGGATGGGAGCTACCCTGGGACAGGGAAAATCAGTGACA 840
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 821 TATTCTTTTTGTCAACTCATCAGGACGGAAGCTACCCTGGAACAGGGAAAATCAGTGACA 880
Query 841 TAGGTAAAGGAAAAGGTGAAGGTACCACTCTAAATTTACCTTTACCTGGAGGTTCAGGTG 900
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 881 TAGGTAAAGGAAAAGGTGAAGGTACCACTCTAAATTTACCTTTGCCTGGAGGTTCAGGTG 940
Query 901 ATATTGCAATGAGAACCGTTTTTGAAGAAATCATTGTTCCATGTGCTCAACGGTTTAAGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 941 ATATTGCAATGAGAACCGTTTTTGAAGAAATCATTGTTCCATGTGCTCAACGGTTCAAGC 1000
Query 961 CAGACCTTATTCTTGTTTCTGCTGGGTATGATGCTCATGTCCTGGATCCACTAGCAAATC 1020
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 CAGATATTATTCTTGTTTCTGCTGGGTATGATGCTCATGTCCTGGATCCACTAGCAAATT 1060
Query 1021 TACAATTCACGACTGGAACATACTACTCATTGGCAAGAGATATTAAA-CAGTTAGCGAAA 1079
|||| |||||||| | |||||||||||||||||||| |||||| ||| | |||||| |||
Sbjct 1061 TACAGTTCACGACCGCAACATACTACTCATTGGCAAAAGATAT-AAAGCGGTTAGCAAAA 1119
Query 1080 GAAGTATGCGGAGGGCGGTGTGTGTTTTTCTTGGAAGGAGGATACAATCTTGAATCGCTT 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1120 GAAGTATGCGGAGGGCGGTGTGTGTTTTTCTTGGAAGGAGGATACAATCTTGAATCACTT 1179
Query 1140 TCATCATCTGTGGCAGACTCGTTTCGAGCATTGCTCGGGGAAGAAAGCTTGGCATCAGAG 1199
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 1180 TCATCATCTGTGGCAGACTCGTTTCGAGCATTGCTTGGAGAAGATAGCTTGGCATCAGAG 1239
Query 1200 TTTGATAACCCAGCTTACCTGTATGATGAACCAATGAGAAAGGTGCGAGATGCAATTGAG 1259
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1240 TTTGATAACCCAGCTTACTTGTACGATGAACCAATGAGAAAGGTGCGAGATGCAATTCAG 1299
Query 1260 AGAGCCAAAAGTATTCATTGCTTATAAGGAGGATTTG 1296
||||||||||| ||||||||||||||||| | |||||
Sbjct 1300 AGAGCCAAAAGCATTCATTGCTTATAAGGTGAATTTG 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5