BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944592
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33420.1 | Symbols: | Peroxidase superfamily protein | chr4... 1629 0.0
> AT4G33420.1 | Symbols: | Peroxidase superfamily protein | chr4:16084828-16086296
FORWARD LENGTH=1197
Length=1197
Score = 1629 bits (882), Expect = 0.0
Identities = 976/1022 (95%), Gaps = 4/1022 (0%)
Strand=Plus/Plus
Query 1 TTAATTA-AGCTGATCATTATCATGTTGACAAGATTTAAGATACAAAACAATAAGATGGT 59
||||||| | |||||| ||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 8 TTAATTATA-CTGATCTTTATCATGTTGACTAGATTTAAGAAACAAAATAATAAGATGGT 66
Query 60 TGGGGCAAATTTAGTGAGCATGATTCTGTTGATGCATGCCATTGTTGGGTTTCCTTTTCA 119
| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 67 TAGGGCAAATATAGTGAGCATGGTTCTGTTGATGCATGCCATCGTTGGGTTTCCTTTTCA 126
Query 120 TGCGAGGGGCTTAAGTATGACTTACTACATGATGAGCTGTCCTTTCGCTGAACAGATTGT 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGCGAGGGGATTAAGTATGACTTACTACATGATGAGCTGTCCTTTCGCTGAACAGATTGT 186
Query 180 GAAGAACAGTGTTAACAATGCTCTTCAAGCCGATCCCACTTTAGCCGCTGGTCTTATCCG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GAAGAACAGTGTTAACAATGCTCTTCAAGCCGATCCCACTTTAGCCGCTGGTCTTATCCG 246
Query 240 TATGTTGTTCCATGACTGTTTCATAGAGGGGTGTGACGCGTCGATTCTTCTAGATTCTAC 299
|||||||||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| ||
Sbjct 247 TATGTTGTTCCACGACTGTTTCATCGAGGGATGTGATGCGTCAATTCTGCTAGATTCAAC 306
Query 300 AAAAGACAACACTGCGGAAAAGGATTCTCCTGCGAATCTGAGTCTACGTGGCTACGAGAT 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 307 GAAAGACAACACTGCGGAAAAGGATTCGCCTGCGAATCTGAGTCTACGTGGCTACGAGAT 366
Query 360 TATCGATGATGCAAAACAGAAAATCGAGAATAGATGTCCAGGAGTTGTATCTTGCGCTGA 419
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 367 CATCGATGATGCAAAGGAGAAAATCGAGAATAGATGTCCAGGAGTTGTATCATGCGCAGA 426
Query 420 TATTGTTGCCATGGCTGCTAGAGATGCTGTCTTTTGGGCTGGTGGTCCATATTATGATAT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 427 TATAGTTGCCATGGCTGCTAGAGATGCTGTCTTTTGGGCTGGTGGTCCATATTATGACAT 486
Query 480 ACCAAAAGGAAGGTTTGATGGTAAAAGATCGAAA-ATCGAAGATACAAGAAATCTACCTT 538
||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct 487 ACCGAAAGGAAGGTTTGATGGTAAAAGATC-AAAGATAGAAGATACAAGAAATCTACCTT 545
Query 539 CACCTTTTCTCAATGCCTCTCAACTAATTCAAACTTTTGGCCAACGTGGTTTCACTCCAC 598
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 546 CACCTTTTCTTAATGCCTCTCAACTCATTCAAACTTTTGGCCAACGTGGTTTCACTCCAC 605
Query 599 AAGATGTTGTTGCTCTCTCTGGAGCACATACCCTAGGAGTTGCACGATGCTCCTCCTTCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AAGATGTTGTTGCTCTCTCTGGAGCACATACCCTAGGAGTTGCACGATGCTCCTCCTTCA 665
Query 659 AGGCTAGACTTACCGTCCCAGATTCTTCATTAGACTCGACTTTTGCAAACACTCTCTCTA 718
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 666 AGGCTAGACTTACCGTCCCAGACTCTTCATTAGACTCGACTTTTGCAAACACTCTCTCTA 725
Query 719 AAACTTGCAGCGCGGGTGACAATGCAGAGCAACCCTTTGATGCTACGCGCAACGATTTCG 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AAACATGCAGCGCGGGTGACAATGCAGAGCAACCCTTTGATGCTACGCGCAACGATTTCG 785
Query 779 ACAATGCTTACTTCAATGCGCTTCAGATGAAATCAGGAGTCCTCTTTTCGGACCAAACCT 838
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 786 ACAATGCTTACTTCAATGCGCTTCAGATGAAATCAGGAGTCCTCTTTTCAGACCAAACTT 845
Query 839 TATTCAACACACCAAGGACCAGGAACCTTGTTAATGGCTATGCCCTTAACCAAGCCAAGT 898
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 846 TATTCAACACACCAAGGACCAGGAATCTTGTTAACGGCTATGCACTTAACCAAGCCAAGT 905
Query 899 TCTTCTTTGATTTCCAACAGGCCATGCGCAAGATGAGCAATCTTGACGTTAAACTTGGCT 958
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 906 TCTTCTTTGATTTCCAACAGGCCATGCGCAAGATGAGCAATCTTGATGTTAAACTTGGCT 965
Query 959 CTCAAGGTGAAATCCGTCAAAATTGTCGGAGTATTAATTAGCCTAGGCCATATCTATTTA 1018
||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||| |||
Sbjct 966 CTCAAGGTGAAGTCCGTCAAAATTGTCGGAGTATTAATTAGGCTAGACCACATCTACTTA 1025
Query 1019 CG 1020
||
Sbjct 1026 CG 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5