BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944597
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33380.1 | Symbols: | unknown protein; Has 194 Blast hits t... 1657 0.0
> AT4G33380.1 | Symbols: | unknown protein; Has 194 Blast hits
to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr4:16071892-16074873 FORWARD
LENGTH=1427
Length=1427
Score = 1657 bits (897), Expect = 0.0
Identities = 985/1029 (96%), Gaps = 0/1029 (0%)
Strand=Plus/Plus
Query 1 TGGGATGACGGCGGTGGGAGATGGCGAGGGGAGGAGGAGAATGGACCGGAGGGATCGCCG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TGGGATGACGGCGGAGGGAGATGGCGAGGGGAGGAGGAGAATGGACCGGAGGGATCGCCG 212
Query 61 GAACCGGAGTTCTCTCTTTCAAAAGAATCACTCTACTCGTTTGCTTTTTCAACATTCTCA 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 213 GAACCGGAGTTCTCTCTTTCAAAAGAATCACTCTACTTGTTTGCTTTTTCAACATTCTCA 272
Query 121 TTGCTCTCTTTGTTCTTCGCTTTCTCTATGCTTCTTCTCTCCACATCTATTCCAATAACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTGCTCTCTTTGTTCTTCGCTTTCTCTATGCTTCTTCTCTCCACATCTATTCCAATAACG 332
Query 181 ATAACGTTGTTAGGTACACAGCTGATGAGATTAGGAAAATGGAGGAATCTATTCGGATTC 240
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 ATAATGTTGTTAAGTACACAGCTGATGAGATTAGGAAAATGGAGGAATCTATTCGGATTC 392
Query 241 GAAGATCGAAAGAACCTACTCTGCTTGTTCAATTGGTGAAGAAGCTGAAGCATGAGGTTG 300
|||||||||| |||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 393 GAAGATCGAAGGAACCTACTCTGATTCTTCAATTGGTGAAGAAGCTCAAGCATGAGGTTT 452
Query 301 CCACTGCAGAATCTAATACTGAACTCTCTCCTAATGTTAAACACAAACTTGTTGATGAGA 360
||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 453 CCACTGCAGAATCTAGTACTGAACTATCTCCTAATGTTAAACACAAACTAGTTGATGAGA 512
Query 361 TCCTGCAGCGTCTGAAAAGCTTTGACGAGAAATCTAATGTTACTCAGCTTAGAGAAGTGG 420
|||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 513 TCCTCCAGCGTTTGAAAAGCTTTGAGGACAAATCTAATGTTACTCAGCTTAGAGAAGTTG 572
Query 421 TAGAAACGTGGCGCAGGGAAAAGCTGGAGGAAGCTAAAGAGCTAATTCAAGGACAAAATG 480
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 573 TAGAAACGTGGCGCAATGAGAAGCTGGAGGAAGCTAAAGAGCTAATTCAAGGGCAAAATG 632
Query 481 GGGTCAATTCCACCCTTATAGTGGAGGAAGCAGGGATGCTTGTAAGAGCTTTGGAGTTGG 540
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GAGTAAATTCCACCCTTATAGTGGAGGAAGCAGGGATGCTTGTAAGAGCTTTGGAGTTGG 692
Query 541 AGTGGGATGTGCTGTCTGAAGAGATCGGGTTCTGGTTACCTGCTGAGGTTACCAATGAAG 600
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||
Sbjct 693 AGTGGGATGTGCTGTCTGAAGAAATCGGTTTCTGGTTACCTGCTGAGGTTACCAATGTAG 752
Query 601 AACACGATGATAAACCTGAAGGAGAGGAAGAGCCTGAGGAGATATTAGCAGGCAGACCAG 660
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 753 AACATGATGATAAACCTGAAGGAGAGGAAGAGCCTGAGGAAATATTGGCAGGCAGACCAG 812
Query 661 TGCCAGCAGTATGCAATGCAGAGCTTCACACAGATTATGGTGGTGCTGCAGTGAGATGGG 720
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TGCCAGCTGTATGTAATGCAGAGCTTCACACAGATTATGGTGGTGCTGCAGTGAGATGGG 872
Query 721 GACTTACACATCATAAAGAGAGTGCAGCTGATTGTTGCCAGGCTTGCTTAGACCAGGCAA 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GGCTTACACATCATAAAGAGAGTGCAGCTGATTGTTGCCAGGCTTGCTTAGACCAGGCAA 932
Query 781 AGCGTGCGAAACCTGGAGAAACAAGATGCAACATTTGGGTTTATTGCCCATCTGAGTTTG 840
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 933 AGCGTGCGAAACCTGGAGAAACGAGATGCAATATTTGGGTTTATTGCCCATCTGAGTTTG 992
Query 841 GTTGTTTCTCTCCAGATATTTACGAGCATAAACATCAGGAATGTTGGCTAAAATATGCAG 900
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||
Sbjct 993 GTTGTTTCTCTCCAGATATTTATGAGCATAAACATCAGGAGTGTTGGCTTAAATACGCAG 1052
Query 901 AGAAGCCAAAACAGAATTTTAAAGACAGATACTCTGAGACATACAGAAACAACCACCCAA 960
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1053 AGAAGCCAAAACAGAATTTCAAAGACAGATATTCTGAGACATACAGAAACAACCACCCAA 1112
Query 961 AAGCGCCTTCTATCGTTCCATGGGTTTCAGGTGTTATAACGGCTTGAGCAAAACCCGTGT 1020
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1113 AAGCGCCATCTATCGTTCCATGGGTTTCAGGTGTTGTAACGGCTTGAGCAAAACCCATGT 1172
Query 1021 AGACAGATT 1029
||||||||
Sbjct 1173 GGACAGATT 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5