BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944600
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33350.1 | Symbols: | Tic22-like family protein | chr4:1606... 1365 0.0
> AT4G33350.1 | Symbols: | Tic22-like family protein | chr4:16064548-16066736
REVERSE LENGTH=918
Length=918
Score = 1365 bits (739), Expect = 0.0
Identities = 813/849 (96%), Gaps = 4/849 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTGCAAATCCAAAAAATGGAGTCATCAGTAAAACCCAATCCTTTCCTCTCCTTCT 60
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3 TCTCTCTGCAAATCC-AAAAATGGAGTCATCAGTGAAACCCAATCCTTTCCTCTCCTTCT 61
Query 61 CTTCTTTCCTTCACCACCACTGTACCCGCTTCAGCTCCGACCTCTCCGCCCGAATTGAAG 120
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 62 CTTCTTTCATTCACCACCAGTGTACCCGCTTCAGCTCCGACCTCTCCGCCCGAATCGAAG 121
Query 121 ACACCAAACGATTCGCCGAAACCCTAGCTACTCGACGTTTCTCTCCTT-TTCCTCCTCCG 179
|||| ||||||||||||||||||||||||||||||||||||||| ||| | |||| |||
Sbjct 122 ACACGAAACGATTCGCCGAAACCCTAGCTACTCGACGTTTCTCT-CTTCCTACTCCGCCG 180
Query 180 CCGTTCGCCTCCATCTCGCAATCCAAGTCTGGAGCTCCGCCAACGACGTTGAGCCCATCG 239
|| ||||||||| |||| ||||||||||||||| | ||| | ||||||||||| |||||
Sbjct 181 CCTTTCGCCTCCGTCTCACAATCCAAGTCTGGAACCCCGACGACGACGTTGAGTCCATCT 240
Query 240 CTTGTCGCTAAAGCTCTCGCTGGCACGTCGGTGTTTACAGTCAGTAACACCAATAACGAA 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGTCGCTAAAGCTCTCGCTGGGACGTCGGTGTTTACAGTCAGTAACACCAATAACGAA 300
Query 300 TTCGTTCTTATCTCGGATCCTACCGGTGACAAGTCTATTGGCTTGCTCTGTTTTCGACAA 359
|||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||||
Sbjct 301 TTCGTTCTTATCTCGGATCCTACCGGAGGCAAGTCTATCGGTTTGCTCTGTTTTCGACAA 360
Query 360 GAGGATGCTGAAGCTTTCCTTGCTCAGGCGCGACTTCGGAGAAGAGAATTGAAAACCAAT 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGGATGCTGAAGCTTTTCTTGCTCAGGCGCGACTTCGGAGAAGAGAATTGAAAACCAAT 420
Query 420 GCGAAGGTTGTTCCCATTACTCTGGACCAGGTGTACTTGCTAAAAGTTGAAGGGATTTCT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCGAAGGTTGTTCCCATTACTCTGGACCAGGTGTACTTGCTAAAAGTTGAAGGGATTTCC 480
Query 480 TTTCGCTTCTTGCCAGATCCAATCCAAATAAAGAATGCATTGGAGCTCAAATCCTCAGGT 539
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 481 TTTCGCTTCTTGCCAGATCCAATCCAAATAAAGAATGCGTTAGAGCTCAAATCCTCAGGA 540
Query 540 AATAAGAATGGGTTTGATGGAGTTCCAGTTTTCCAGTCTGAGCTTCTTGTTGTGAGGaaa 599
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 541 AATAAGAATGGGTTTGATGGAGTTCCGGTTTTTCAGTCTGAGCTTCTTGTTGTGAGGAAA 600
Query 600 aaaaaTAGACGTTACTGCCCTGTATATTTCAGTAAGGAAGATATAGAGAAGGAACTTTCT 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 AAAAATAGACGTTACTGCCCTGTATATTTCAGTAAGGAAGATATAGAGAGGGAACTTTCT 660
Query 660 AAATATACGAGAGCATCAAGAGGAGATCAACAAATTATGGTTGGGAGTCTGGAAGATGTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAATATACGAGAGCATCAAGAGGAGATCAACAAATTATGGTTGGGAGTCTGGAAGATGTG 720
Query 720 TTGAGGAAAATGGAGATGAGCGAGAAGAATTCAGGTTGGGAAGATGTAATATTCATTCCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGAGGAAAATGGAGATGAGCGAGAAGAATTCAGGTTGGGAAGATGTAATATTCATTCCA 780
Query 780 CCGGGAAGAAGTTATGCACAACACATGCAGGAGTTGATCAAAGAGTAAAAACGATAATAG 839
|||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 781 CCGGGAAGAAGTTATGCACAACACATGCAGGATTTGATCAAAGAGTAAAACC-ATAATAG 839
Query 840 ACACAATGT 848
|||||||||
Sbjct 840 ACACAATGT 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5