BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944603

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33300.1 | Symbols: ADR1-L1 | ADR1-like 1 | chr4:16051051-16...   252    3e-66


> AT4G33300.1 | Symbols: ADR1-L1 | ADR1-like 1 | chr4:16051051-16056526 
REVERSE LENGTH=2946
Length=2946

 Score =  252 bits (136),  Expect = 3e-66
 Identities = 146/151 (97%), Gaps = 0/151 (0%)
 Strand=Plus/Plus

Query  149   TACAAGCTCTCGAAATCTTAAGGCTGTATGCTTGCCCTGAGCTAAAGACATTACCTGGAG  208
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  2492  TACAAGCTCTCGAAATCTTAAGGCTATATGCTTGCCCTGAGCTAAAGACATTACCTGGAG  2551

Query  209   AAATCTGTGAGCTTCCTGGGCTTAAGTACCTAGACATCTCACAATGTGTTAGCCTGAGTT  268
             |||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct  2552  AAATATGTGAGCTTCCTGGGCTTAAGTATCTCGACATCTCACAATGTGTCAGCCTGAGTT  2611

Query  269   GTCTTCCAGAGGAAATAGGAAAGCTAAAGAA  299
             |||||||||||||||||||||||||||||||
Sbjct  2612  GTCTTCCAGAGGAAATAGGAAAGCTAAAGAA  2642


 Score =  217 bits (117),  Expect = 9e-56
 Identities = 138/148 (93%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  300   ACCGAGCTCTGCTGTTTCACTGAAATCTCTGCGCCATGTAATATGCGATACCGACGTTGC  359
             |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  2685  ACCGAGCTCTGCTGTTTCACTGAAGTCTCTGCGCCATGTAATCTGCGATACCGACGTTGC  2744

Query  360   ATTTATGTGGGACGAAGTTAAGAAGG-TCGTTCCAGGACTAAAGATTGAAGCTGCTGAGA  418
             |||||||||||| |||||| |||||| | ||||||||  ||||||| |||||||||||||
Sbjct  2745  ATTTATGTGGGAAGAAGTTGAGAAGGCT-GTTCCAGGGTTAAAGATCGAAGCTGCTGAGA  2803

Query  419   AATGCTTCAGCCTAGATTGGCTTGACGA  446
             |||||||||||||||| |||||||||||
Sbjct  2804  AATGCTTCAGCCTAGACTGGCTTGACGA  2831


 Score =  191 bits (103),  Expect = 6e-48
 Identities = 115/121 (95%), Gaps = 0/121 (0%)
 Strand=Plus/Plus

Query  15    CCACAACATGTCTTTGATTCTGTGCAAGATCAATAAAAGTTTTGATCAAACCGGAGTTGA  74
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  2274  CCACAAGATGTCTTTGATTCTGTGCAAGATCAATAAAAGTTTTGATCAAACCGGACTTGA  2333

Query  75    CGTGGCCGATATCTTCTCAAAATTGGGGGATCTGACGATAGATCACTGTGATGATCTCGT  134
             |||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct  2334  CGTGGCAGATATCTTCCCAAAATTGGGCGATCTGACAATAGATCACTGTGATGATCTCGT  2393

Query  135   G  135
             |
Sbjct  2394  G  2394



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5