BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944608
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33250.1 | Symbols: EIF3K, TIF3K1, ATTIF3K1 | eukaryotic tra... 1103 0.0
> AT4G33250.1 | Symbols: EIF3K, TIF3K1, ATTIF3K1 | eukaryotic translation
initiation factor 3K | chr4:16038867-16040711 REVERSE
LENGTH=974
Length=974
Score = 1103 bits (597), Expect = 0.0
Identities = 688/731 (94%), Gaps = 10/731 (1%)
Strand=Plus/Plus
Query 1 GAGAAAGAGAAAGAAGG-AGAGATGGGAGTAGAGATCCAGTCCCCGCAGGAACAGAGCTC 59
||||| ||||||| ||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 74 GAGAAGGAGAAAG-AGGCAGAGATGGGAGTAGAGATCCAATCGCCGCAGGAACAGAGCTC 132
Query 60 TTACACTGTTGAGCAGCTCGTCGCCGTCAATCCCTTCAACCCTGAAATCCTTCCTGATCT 119
|||||| |||||||||||||||||| | ||||| ||||||||||||||||| ||||||||
Sbjct 133 TTACACCGTTGAGCAGCTCGTCGCCCTTAATCCTTTCAACCCTGAAATCCTGCCTGATCT 192
Query 120 CGAAAACTACGTTAATGAGCAGGTTACATCTCAAACGTATAGTCTGGAAGCAAACCTATG 179
||||||||||||| | | | |||||||| ||||||||||||||||||| |||||||||
Sbjct 193 CGAAAACTACGTT-A--A-C--GTTACATCGCAAACGTATAGTCTGGAAGTAAACCTATG 246
Query 180 CTTGCTTCGGCTCTATCAGTTTGAGCCTGAGCGCATGAATACTCATATCGTGGCTCGAAT 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 247 CTTGCTTCGGCTCTATCAGTTTGAGCCTGAGCGCATGAACACTCATATCGTGGCTCGAAT 306
Query 240 CTTGGTCAAGGCTCTTATGGCTATGCCAACTCCAGACTTCAGCCTTTGCCTCTTCTTGAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTTGGTCAAGGCTCTTATGGCTATGCCAACTCCAGACTTCAGCCTTTGCCTCTTCTTGAT 366
Query 300 TCCCGAAAGAGTGCAAATGGAGGAGCAGTTCAAGGCACTAATCGTTCTATCACACTACCT 359
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 367 TCCCGAAAGAGTGCAAATGGAGGAGCAGTTCAAGTCACTAATTGTTCTATCACACTACCT 426
Query 360 TGAGACTGGGAGGTTCCAACAGTTCTGGGATGAAGCGGCCAAGAACCGTAACATTCTCGA 419
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 427 TGAGACTGGGAGGTTCCAACAGTTCTGGGATGAAGCTGCCAAGAACCGTCACATTCTCGA 486
Query 420 GGCTGTTCCAGGTTTTGAGCAAGCTATCCAAGCATATGCAAGTCACCTTCTTAGCTTAAG 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 487 GGCTGTTCCAGGTTTTGAGCAAGCTATTCAAGCATATGCAAGTCACCTTCTTAGCTTAAG 546
Query 480 CTACCAAAAAGTTCCAAGATCTGTGCTTGCTGAGGCTGTTAACATGGATGGTGCATCTCT 539
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 547 CTACCAAAAGGTTCCAAGATCAGTGCTGGCTGAGGCTGTTAACATGGATGGTGCATCTCT 606
Query 540 AGACAAGTTTATTGAGCACCAAATGACTAGCAGTGGATGGATTGTTGAGAAAGAGGGTGG 599
|||||| || || ||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 607 AGACAAATTCATCGAGCAGCAAGTGACTAACAGTGGATGGATTGTTGAGAAAGAGGGTGG 666
Query 600 AAGTATTGTCTTGCCGCAAAATGAATTTAACCATCCGGAACTTAAGAAAAATACAGGTGA 659
|||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 667 AAGTATTGTCTTACCACAAAATGAATTTAACCATCCGGAGCTCAAGAAAAATACAGGTGA 726
Query 660 GAATGTTCCCTTGGAACACATCGCTCGCATCTTCCCCATCCTTGGTTGAATCAAGTT-AT 718
||||||||||||||||||||| || ||||||||||||||||||||||||| ||| || ||
Sbjct 727 GAATGTTCCCTTGGAACACATTGCCCGCATCTTCCCCATCCTTGGTTGAACCAA-TTCAT 785
Query 719 GAGGACACTGC 729
||| |||||||
Sbjct 786 GAGAACACTGC 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5