BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944616
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33160.1 | Symbols: | F-box family protein | chr4:15994089-... 1777 0.0
> AT4G33160.1 | Symbols: | F-box family protein | chr4:15994089-15995655
FORWARD LENGTH=1567
Length=1567
Score = 1777 bits (962), Expect = 0.0
Identities = 1169/1269 (92%), Gaps = 14/1269 (1%)
Strand=Plus/Plus
Query 21 ATGGGATTCTCAGCTGGGAAAAGAAAATCTCGAGAAGAAGAAGATACA-ACAGCGAGCTT 79
|||||||||||| |||||||||||||||| |||| |||||||| | | | || ||||||
Sbjct 192 ATGGGATTCTCAACTGGGAAAAGAAAATCAAGAGATGAAGAAGA-AGATAGAGTGAGCTT 250
Query 80 CTTAGCTTCTGAATTCCCCATGGATGACCTCAGCGATGACGTCCTCGAGAGAGTCCTCTC 139
||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 251 CTTCGCTTCTGAATTCCCCATGGATGACCTCAACGATGACGTTCTCGAGAGAGTCCTCTC 310
Query 140 ATGGCTACCTCCTTCTTGTTTCTTCCGTATGAGCTCTGTCTGCAAGAGATGGAAATCAAG 199
||||||||| ||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 311 ATGGCTACCAACTTCTTGCTTCTTTCGTATGAGCTCTGTTTGCAAAAGATGGAAATCAAG 370
Query 200 CCAATCCTCAAAAAGCTTCGAGCTTGCTTGCTCTCAAATCCCTACTCGAGATCCTTGGTT 259
|||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCAAACCTCGAAAAGCTTCAAGCTTGCTTGCTCTCAAATCCCTACTCGAGATCCTTGGTT 430
Query 260 CTTCATGATCCATAACGATTCCCATTCTTCGTCCTTCGTTTTCGACTCCACTGAGAACAC 319
|||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 431 CTTCATGATCGACAACGATTCCAATTCTTCCTCCTTCGTTTTCGACTCCACTGAGAACTC 490
Query 320 CTGGAAAAACCTCAGCCGCCGCGATTTCCTCCACCACCGCCGCCGCGATTTCATCCCCGT 379
||||||||| |||| ||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 491 CTGGAAAAATCTCAACCGCCGCGATTTCCTCCACCACCACCGTCAAGATTTCATCCCCGT 550
Query 380 CGCTTCCTCCGGCGGCTTGCTCTGTTTCCGCTGCTCCATCTCCGGCGAATTCCTCCTCCG 439
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 551 CGCTTCTTCCGGCGGCTTGCTCTGTTACCGCTGCTCCATCTCCGGCGACTTCCTCCTCCG 610
Query 440 TAATCCCCTCACTGGATCTTCTCGCGACATTCCTTCTCCAATCTCTCAAGATAGTGACAA 499
|||||| ||||||||||||||||| ||||||||||||| || | ||| | | ||||
Sbjct 611 TAATCCACTCACTGGATCTTCTCGTGACATTCCTTCTC-AAGATAACAACA-ACA-ACAA 667
Query 500 ACCTCTCCAAGCTGTAGCCATGACCACCACCACTGTTACTCCCTCCAGCTATAAGCTCGT 559
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 668 ACCTCTCCAAGCCGTAGCCATGACCACCACTACTGTTACTCCCTCCAGCTATACGCTCGT 727
Query 560 TACCATCTCCGGTGAAATCCCAAATCTCAGTTTTAAGATCTACGAATCAAACTCAGATTC 619
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 728 TACCATCTCCGGTGAAATCCCAAATCTCAGTTTCAAGATCTACGAATCAAACGCAGATTC 787
Query 620 ATGGAGCAAAGACCAAGAATTGGAATTAGCCAAGAACACTGATTCATCATTACATGATGA 679
|||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||
Sbjct 788 TTGGAGCAAAGACCAAGAACTGGAATCAGTCAAGAACAATGATTCATCATTACATGATGA 847
Query 680 TTCTGATACTGACATTGGCACAGTCTACTTCCTTAGCAAGACT-GGAAATGTTGT-GATT 737
|| ||||||||||| ||||||||||||||| |||||||| || ||||| ||||| | |
Sbjct 848 TTATGATACTGACAGTGGCACAGTCTACTTTCTTAGCAA-ACAAGGAAACGTTGTCG-TG 905
Query 738 GCGAGTAACAACAATCTTCAGAGAAGTCCATCGAAGCAATACTCTTCCGTTATTACCGTT 797
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 906 GCGAGTAACAA---TCTTCAGAGAAGTCCGTCGAAGCAATACTCTTCCGTTATTACCGTT 962
Query 798 ACAGACGATGCCGAAATCGTCTATTTTCTCAGCTCTTACGGAACAGTTGTAGCTTGTGAT 857
||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 963 ACAGATGAAGCCGAAATCGTCTATTTTCTCAGCTCTTACGGAACAATTGTAGCTTGTGAT 1022
Query 858 CTCACGAAACGATGCTTCACCGAGCTGCCGAAGCTTCTTCCTCCGTTCCTAGAGTATTCC 917
||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1023 CTCACTAAACGATGCTTCACCGAGCTACCAAAGCTTCTTCCTCCGTTCCTAGAGTACTCC 1082
Query 918 ATCGACCTGGTGGAATGT-AATGGAACAATGTATGTGATTCTCCTCTCTGAGTTCTTTGA 976
|||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1083 ATCGACTTGGTGGAATGTGAA-GGAACAATGTATGTGATTCTTCTCTCTGAGTTCTTTGA 1141
Query 977 AAGCGCGAGTTTAAGGGTCTGGAGACTTGACAATAACCGGGAATGGGTTCAAGTCGGGAT 1036
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AAGCGCAAGTTTAAGGATCTGGAGACTTGACAATAACCGGGAATGGGTTCAAGTCGGGAT 1201
Query 1037 GTTGCCTCCCGCGTTGTCTCATGAGCTATACGGTAAAAAAGGCGACATAAACTGCGTTGG 1096
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1202 GTTGCCTCCCGCGTTGTCTCATGAGTTATACGGTAAGAAAGGCGACATAAACTGCGTTGG 1261
Query 1097 AGGAGCTGGAAACAAGGTACTTGTGTGCTTCAATGCGAGTCCTCCAGAGGTGTATTGTAG 1156
|||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1262 AGGAGCTGGAAACAAGATACTCGTGTGCTTCAATGCTAGTCCTCCAGAAGTGTATTGTAG 1321
Query 1157 ATACTTTGTGTATGATTTAAATGCAGAAGAGTGGAGTGAGTTGCCGAGATGCTTCAAGGA 1216
||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 1322 ATACTTTGTGTATGATTTAGTTGCAGAAGAGTGGAACGAGTTGCCGAAATGCTTCAAGGA 1381
Query 1217 TGGAGAAGCTATGGATTTCGTTTCCGCTCTTTCATTCCAACCTAGGATCGAGGCTACAGC 1276
|||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1382 TGGAGAAGCTGTGGATTTTGTTTCCGCTCTTTCTTTCCAGCCTAGGATCGAGGCTACAGT 1441
Query 1277 TTGAAATTT 1285
|||||||||
Sbjct 1442 TTGAAATTT 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5