BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944623

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33100.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mitochond...   477    3e-134


> AT4G33100.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mitochondrial 
distribution/morphology family 35/apoptosis (InterPro:IPR007918); 
Has 214 Blast hits to 214 proteins in 102 species: 
Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants 
- 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 
| chr4:15971174-15972489 FORWARD LENGTH=595
Length=595

 Score =  477 bits (258),  Expect = 3e-134
 Identities = 286/299 (96%), Gaps = 3/299 (1%)
 Strand=Plus/Plus

Query  21   ATGGGCTTATTGAAGAAAAAAGATTCAACTTCAGCTCGCTCCTCTACTTCCCCCTGCGCC  80
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  170  ATGGGCTTATTGAAGAAAAAAGATTCAACTTCAGCTCGCTCCTCTACTTCTCCCTGCGCC  229

Query  81   GATTTGAGAAACGCTTACCACAATTGCTTCAACAAATGGTACTCGGAGAAGTTTGTTAAA  140
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  230  GATTTGCGAAACGCTTACCACAATTGCTTCAACAAATGGTACTCGGAGAAGTTTGTTAAA  289

Query  141  GGCCAATGGGATAAAGAAGAGTGTGTTGTCGAGTGGAAAAAGTACAGAGACTGTCTCTCG  200
            |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  290  GGCCAATGGGATAAAGAAGAGTGTGTTGCCGAGTGGAAAAAATACAGAGACTGTCTCTCG  349

Query  201  GAGAATTTAGATGGCAAGCTTCTCACTCGCATTTTGGAAGTAGATGGTGAGCTGAATCCA  260
            |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  350  GAGAATTTAGATGGTAAGCTTCTCACTCGCATTTTGGAGGTAGATGGGGAGCTGAATCCA  409

Query  261  ACAAAGCAAGCT---GATTCTAAAGAATCTAGTTCATGATACTTGATTCCCATGTTTTT  316
            ||||||||||||   ||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct  410  ACAAAGCAAGCTACTGATTCAAAAGAATCCAGTTCATGATACTTGATCCCCATGTTTTT  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14728450457


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5