BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944626
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33080.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent a... 2689 0.0
AT3G23310.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent a... 196 4e-49
> AT4G33080.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent
and protein kinase C) kinase family protein | chr4:15959962-15964710
FORWARD LENGTH=2158
Length=2158
Score = 2689 bits (1456), Expect = 0.0
Identities = 1545/1589 (97%), Gaps = 1/1589 (0%)
Strand=Plus/Plus
Query 9 AGAGAGATAGATATGGAGGATATACAGGAGGAAGAGAGCGGTACGGACGAGGAGGTTCTG 68
||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 173 AGAGAGAGAGAGATGGAGGATATACAGGAGGAAGAGAACGGTACGGACGAGGAGGTTCTG 232
Query 69 GGATCGAGCTTGACCATGGAGAAAGTGGCCGCAGCGAAGCAGTACATCGAGAATCACTAC 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GGATCGAGCTTGACCATGGAGAAAGTGGCCGCAGCGAAGCAGTACATCGAGAATCACTAC 292
Query 129 AGAGCTCAGAACAAGAACATTCAGGAGAGGAAAGAGAGACGGTGGATCTTAGAAAGAAAG 188
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 293 AAAGCTCAGAACAAGAACATTCAAGAGAGGAAAGAGAGACGGTGGATCTTAGAAAGAAAG 352
Query 189 TTAGCTTCTTCTGGAGTGCCAAAAGAGGAGCAAATCAGCATGATTAAAGATCTGGAGAGA 248
|| || ||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 353 TTGGCGTCTTCTGGAGTGCCAAAAGAGGAGCAAATCAACATGATTAAAGACCTGGAGAGA 412
Query 249 AAAGAGACAGAGTTTATGAGGCTTAAAAGGAACAAGATTAGTGTTGATGACTTTGAGCTT 308
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 413 AAAGAGACAGAGTTTATGAGGCTTAAAAGGAACAAGATTAGTGTCGATGACTTTGAGCTT 472
Query 309 TTGACTATCATTGGAAGAGGTGCTTTTGGTGAGGTTCGCTTATGTCGGGAGAAAAAGTCT 368
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 473 TTGACTATCATTGGAAGAGGTGCTTTTGGTGAGGTTCGCTTATGTCGGGAGAGAAAGTCT 532
Query 369 GGAAATATTTATGCCATGAAGAAGTTAAAGAAATCTGAAATGGTCATGAGAGGACAGGTT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GGAAATATTTATGCCATGAAGAAGTTAAAGAAATCTGAAATGGTCATGAGAGGACAGGTT 592
Query 429 GAGCATGTCAGAGCAGAGAGAAACCTGCTGGCTGAGGTTGCAAGCCATTATATTGTGAAA 488
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 593 GAGCATGTCAGAGCAGAGAGGAACCTGCTGGCTGAGGTTGAAAGCCATTATATTGTGAAG 652
Query 489 CTCTACTATTCATTTCAGGATGCCGAGTATCTATATCTGATTATGGAATATCTCCCCGGT 548
|| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 653 CTTTACTATTCATTTCAGGATCCCGAGTATCTGTATCTGATTATGGAATATCTCCCCGGT 712
Query 549 GGTGATATGATGACCTTGCTCATGAGGGAGGACACATTACGGGAAGATGTTGCCCGATTT 608
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 713 GGTGATATGATGACCTTGCTCATGAGGGAGGACACATTACGGGAAGATGTTGCCAGATTT 772
Query 609 TATATTGCTCAAAGTGTCCTGGCCATTGAATCCATACACAGATACAACTATATTCATAGG 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TATATTGCTCAAAGTGTCCTGGCCATTGAATCCATACACAGATACAACTATATTCATAGG 832
Query 669 GATATCAAACCTGATAACCTACTTTTGGACAAAGATGGGCACATGAAACTCTCGGATTTT 728
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 833 GATATCAAACCTGATAACCTACTTTTGGACAAAGATGGGCACATGAAACTCTCGGACTTT 892
Query 729 GGGCTTTGTAAGCCTCTTGATTGTAGAAATTTACCTTCAATCCAGGAGAATAGGGCCACC 788
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 893 GGGCTCTGTAAGCCTCTTGATTGTAGAAATTTACCTTCAATTCAGGAGAATAGGGCCACG 952
Query 789 GATGATGAAACTATGACAGAACCTATGGATGTTGATAGATGTTTTCCTGACACTGATAAC 848
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 953 GATGATGAAACTATGTCAGAACCTATGGATGTTGATAGATGCTTTCCTGACACTGATAAC 1012
Query 849 AAGAGAAGCTGGCGCAGTCCCCAAGAACAACTTCAGCATTGGCAGATGAATCGCAGAAAA 908
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1013 AAGAGAAGCTGGCGCAGTCCCCAGGAACAACTTCAGCATTGGCAGATGAATCGCAGAAAA 1072
Query 909 CTAGCGTTTTCAACTGTGGGAACACCTGACTATATTGCTCCTGAAGTTTTGCTGAAGAAA 968
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1073 CTAGCATTTTCAACTGTGGGAACACCGGACTATATTGCTCCTGAAGTTTTGCTGAAGAAA 1132
Query 969 GGATATGGCATGGAATGTGATTGGTGGTCGTTAGGTGCAATTATGTACGAAATGCTCGTT 1028
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1133 GGATATGGCATGGAATGTGATTGGTGGTCATTAGGTGCAATTATGTACGAAATGCTCGTT 1192
Query 1029 GGGTATCCTCCTTTTTATGCTGATGACCCTATATCAACTTGCAGAAAGATCGTCCATTGG 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GGGTATCCTCCTTTTTATGCTGATGACCCTATATCAACTTGCAGAAAGATCGTCCATTGG 1252
Query 1089 AGAAATCATTTGAAATTTCCCGAGGATGCGAAGTTGTCATCCGAGGCAAAAGATCTTATC 1148
||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1253 AGAAACCATTTGAAATTTCCTGAGGATGCGAAGTTTTCATCTGAGGCAAAAGATCTTATC 1312
Query 1149 TGCAGGTTGCTGTGCAACGTTGACCATAGGCTTGGCACTGGAGGAGGAGCCCAGCAAATC 1208
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1313 TGCAGGTTGCTGTGCAACGTTGACCATAGGCTTGGTACTGGAGGAGGAGCCCAGCAAATC 1372
Query 1209 AAGGATCATTCTTGGTTCAAGGATGTTGTGTGGGAAAAGCTCTATGAAATGGAAGCTGCG 1268
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1373 AAGGATCATCCTTGGTTCAAGGATGTTGTGTGGGAAAAGCTCTATGAAATGGAGGCTGCG 1432
Query 1269 TTCAAACCAGAAGTGAACGGCGAGCTAGATACACAAAATTTTATGAAGTTTGATGAAGTG 1328
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TACAAACCAGAAGTGAACGACGAGCTAGATACACAAAATTTTATGAAGTTTGATGAAGTG 1492
Query 1329 AATTCTCCTGCACCTGAAAGAACTAGATCGGGCCCCTCCAGGAAGATGCTTCTTGCTCCC 1388
||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1493 AATTCTCCTGCACCTGAAAGAACTAGATCAGGACTCTCCAGGAAGATGCTTCTTGCTCCC 1552
Query 1389 AAGGATTTAAGTTTTGTTGGCTACACATACAAGAACTTTGACGCTGTAAAAGGATTGCGT 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 AAGGATTTAAGTTTTGTTGGCTACACATACAAGAACTTTGACGCTGTAAAAGGATTGCGT 1612
Query 1449 CATTCACTTGAGATGGCAAGAACTATGTCTCTAGATCGATCACCAGCTGAGGCGATGCCT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 CATTCACTTGAGATGGCAAGAACTATGTCTCTAGATCGATCACCAGCTGAGGCGATGCCT 1672
Query 1509 GTGGAGCTGATAAGCGGGGAAGCAGCAGAGGCACAGATGGTATCATCGATGGATGATCCG 1568
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GTGGAGCTGATAAGCGGGGAAGCAGCAGAGGCACAGATGGTATCATCGATGGATGATCCA 1732
Query 1569 ATGATAATTTGAAATAACCGAACAA-GAT 1596
|||||||||||||| |||||| ||| |||
Sbjct 1733 ATGATAATTTGAAAGAACCGATCAAAGAT 1761
> AT3G23310.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent
and protein kinase C) kinase family protein | chr3:8338900-8343632
FORWARD LENGTH=2487
Length=2487
Score = 196 bits (106), Expect = 4e-49
Identities = 306/401 (76%), Gaps = 19/401 (5%)
Strand=Plus/Plus
Query 917 TTCAACTGTGGGAACACCTGACTATATTGCTCCTGAAGTTTTGCTGAAGAAAGGATATGG 976
||| || || ||||| ||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1460 TTCTACAGTTGGAACTCCTGACTATATTGCTCCAGAAGTTTTGTTGAAGAAAGGATATGG 1519
Query 977 CATGGAATGTGATTGGTGGTCG-TTAGGTGCAATTATGTACGAAATGCTCGTTGGGTATC 1035
||||||||||||||||||||| || ||||| || ||||| |||||||| || |||| ||
Sbjct 1520 CATGGAATGTGATTGGTGGTCACTT-GGTGCGATCATGTATGAAATGCTTGTGGGGTTTC 1578
Query 1036 CTCCTTTTTATGCTGATGACCCTAT-ATCAACTTGCAGAAAGATCGTCCATTGGAGAAAT 1094
| || |||||| | || || || || | ||||||| |||||||| || |||||| ||||
Sbjct 1579 CACCATTTTATTCAGACGAGCCAATGA-CAACTTGTAGAAAGATAGTAAATTGGAAAAAT 1637
Query 1095 CATTTGAAATTTCCC-GAGGATGCGAAGTTGTCATCC-GAGGCAAAAGATCTTATCTGCA 1152
|||| ||||| ||| || || | | | | ||| || || || || ||||| || || |
Sbjct 1638 TATTTAAAATT-CCCTGATGAGGTTAGGCTATCA-CCAGAAGCCAAGGATCTAATTTGTA 1695
Query 1153 GG-TTGCTGTGCAACGTTGACCATAGGCTTGGCACTGGAGGAGGAGCCCA-GCAAATCAA 1210
| || | |||||||| || || ||| |||| || | |||||| | | |||| ||
Sbjct 1696 GACTTT-TATGCAACGTAGAACAAAGGATTGGAACAA-A--AGGAGCAAATG-AAATTAA 1750
Query 1211 GGATCATTCTTGGTTCAA-GGATGTTGTGTGGGAAAAGCTCTATGAAATGGAAG-CTGCG 1268
||| || ||||||||| || ||| | ||||||||| | ||| | ||| ||| ||||
Sbjct 1751 GGAACACCCTTGGTTCAGTGG-TGTCGAATGGGAAAAGTTGTATCAGATG-AAGGCTGCT 1808
Query 1269 TTCAAACCAGAAGTGAACGGCGAGCTAGATACACAAAATTT 1309
|| | || |||| || | |||||| || || ||||||||
Sbjct 1809 TTTATTCCCCAAGTTAATGACGAGCTGGACACCCAAAATTT 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79065858375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5