BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944631

Length=1966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31610.1 | Symbols: REM1, ATREM1 | Transcriptional factor B3...   340    2e-92


> AT4G31610.1 | Symbols: REM1, ATREM1 | Transcriptional factor 
B3 family protein | chr4:15317499-15320020 FORWARD LENGTH=1999
Length=1999

 Score =  340 bits (184),  Expect = 2e-92
 Identities = 208/219 (95%), Gaps = 3/219 (1%)
 Strand=Plus/Plus

Query  1605  AAGAATACACCTAGCCGTGAAAGTACCGGGCAACTATCACTTCCAATGAGTTTCACGAGG  1664
             ||| |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct  1066  AAGTATACACCTAGCCGTGAGACTACCGGGCAACTATCACTTCCAGTGAGTTTCACGAGG  1125

Query  1665  AAGAATAACATTAATAAGGCTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGG  1724
             || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1126  AACAATAGCATTAATAAGACTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGG  1185

Query  1725  TCATCTTATCTACAGATAACAGGACTTGGACGAG-C-C-GGAAGTGAATGGTTTTATTTG  1781
             |||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||||
Sbjct  1186  TCATCTTATCTACAGATAACAGGACTTGGAAGAGGCGCCGGAAGTGAATGGTTTTATTTG  1245

Query  1782  AGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTG  1820
             |||||||||||||||||||||||||||||||||||||||
Sbjct  1246  AGAAGAGGTTGGAGAGAGATGTGCGAAGCGAATGGAGTG  1284


 Score =  303 bits (164),  Expect = 3e-81
 Identities = 214/239 (90%), Gaps = 0/239 (0%)
 Strand=Plus/Plus

Query  1378  GGAGAAGATGGACAATTAAACTTGCAAAAAACATCTCAAGTGCTGTATTTTACATCAGAC  1437
             |||||||||||||||| |||||||| |||||||||||||||| ||| |||||||||||||
Sbjct  809   GGAGAAGATGGACAATGAAACTTGCCAAAAACATCTCAAGTGGTGTGTTTTACATCAGAC  868

Query  1438  TAGGCTGGGAAAACGTCTGCTCCGTTAATGGGCTAAGTGAAGGAGAGTTATGTAAGTTTA  1497
             ||||||||| |||| |||||| || ||||||||||| | ||||||| |||||||||||||
Sbjct  869   TAGGCTGGGGAAACTTCTGCTGCGCTAATGGGCTAACTCAAGGAGACTTATGTAAGTTTA  928

Query  1498  AACTTTTCCAAAATGGGGAAAGACCTGTGCTTTGGCTGTGTCCAGGGGAACCTGGCATTG  1557
             ||||||||||||||| |||||| |||||||||||| ||||||||  |||| |||||| ||
Sbjct  929   AACTTTTCCAAAATGAGGAAAGGCCTGTGCTTTGGTTGTGTCCACAGGAATCTGGCAATG  988

Query  1558  GCCACAAACAGAAGAGGACGTTGGATGAAGTTTCCAAGGGAAAGGAGAAGAATACACCT  1616
             |||  ||| ||||||||||||| |||||||||||||| |||||||||||||| || |||
Sbjct  989   GCCGTAAAGAGAAGAGGACGTTTGATGAAGTTTCCAAAGGAAAGGAGAAGAAGACCCCT  1047


 Score =  158 bits (85),  Expect = 3e-37
 Identities = 95/100 (95%), Gaps = 0/100 (0%)
 Strand=Plus/Plus

Query  1821  AAGGGAAAAGGAAACCAAAGCACTCGTAAGAAGAGAGCTTGTGAGACTGCTCCTCAGCCA  1880
             |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  1375  AAGGGAAAAGGAAACCAAAGAACTCGTAAGAAGAGAGCTTGTGAGACTGCTCCACAGCCA  1434

Query  1881  AAGAATGTGAAAAAGGCTCCAAGAGTAGGAGTAGAGGGAC  1920
             | ||||||||||||| |||||||| |||||||||||||||
Sbjct  1435  AGGAATGTGAAAAAGACTCCAAGATTAGGAGTAGAGGGAC  1474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 97389057300


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5