BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944634

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31615.1 | Symbols:  | Transcriptional factor B3 family prot...   178    3e-44


> AT4G31615.1 | Symbols:  | Transcriptional factor B3 family protein 
| chr4:15320297-15322194 REVERSE LENGTH=1464
Length=1464

 Score =  178 bits (96),  Expect = 3e-44
 Identities = 139/159 (87%), Gaps = 6/159 (4%)
 Strand=Plus/Plus

Query  143   AGACTCTGGTCGAAAAGAGAGCTCTACTTTCCACAGAAGGAGGATCCTCTCGCCGCCATC  202
             |||||  |||| |||||||||||| | ||||  ||||| ||||||| ||||||||| |||
Sbjct  1175  AGACTAGGGTCAAAAAGAGAGCTCGAGTTTCTGCAGAAAGAGGATCTTCTCGCCGCAATC  1234

Query  203   AGGCATCAAACAAACCCAATGCTGATCCACAAAACTTGCACCGCAGG-CAACCAC----C  257
             |||||||||| ||||||||||||||||||||||||||||| | | || |||||||    |
Sbjct  1235  AGGCATCAAATAAACCCAATGCTGATCCACAAAACTTGCAGC-CTGGGCAACCACATTGC  1293

Query  258   TCAATCTCTGATCAAGTGAAAAAGGTGAAACAGATTATT  296
             |||||||||||||||||| ||||||||||||||||||||
Sbjct  1294  TCAATCTCTGATCAAGTGCAAAAGGTGAAACAGATTATT  1332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5