BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944648
Length=2281
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1378 0.0
> AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G32960.1);
Has 552 Blast hits to 489 proteins in 85 species: Archae -
4; Bacteria - 14; Metazoa - 187; Fungi - 12; Plants - 225;
Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). |
chr4:15910345-15914337 REVERSE LENGTH=2280
Length=2280
Score = 1378 bits (746), Expect = 0.0
Identities = 899/973 (92%), Gaps = 9/973 (1%)
Strand=Plus/Plus
Query 2 GACGGA-ACTTTTACGGCGAATGGAGGAAGAAAAAGCGGCCATGACCGGAGCTGTAGCGA 60
|||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||| |
Sbjct 18 GACGGAGCCTTTTACGGCGAATGGAGGAAGACAGAGCCACCATGACCGGAGCTGTAGCCA 77
Query 61 CCCGAGTCACGATGGAACCTAGCGAAGACATACTCATATGCGTCGATGTTGATGCGGAAT 120
| |||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 78 CTCGAGACTCGGTGGAACCCAGCGAAGACATACTCATATGCGTCGATGTTGATGCGGAAT 137
Query 121 CGACGGTGGAGATGAAGACCACTGGAACTAACGGTAAGCCACTGAACAGACTGGAGTGCG 180
|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 138 CGACGGTGGAGATGAAGACCACTGGAACTAACGGTAAGCCTTTGAACAGGCTCGAGTGCC 197
Query 181 TCAAGCTAGCCATTACTCGCTTTATTCACGACAAGCTCGCCAGAAATTCCGATCACCGTT 240
||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || |
Sbjct 198 TCAAGCTAGCCATTACTCGCTTTATCCACGACAAGCTCTCCAGAAATTCCGATCATCGCT 257
Query 241 TTGCTTTCGCTACCCTCTCCAAATCAGCCGCTTGGCC-AAACAAGGAATTCACCAGTGAT 299
|||||||||||||||||||| | ||||||||||||| ||| ||||||||| ||| |||
Sbjct 258 TTGCTTTCGCTACCCTCTCCCAGTCAGCCGCTTGGCTTAAA-AAGGAATTCTCCAACGAT 316
Query 300 GCTGAATCTGCTGCTGCTTCTCTAAGGGAAATCTCAGCTACTA-ATTCCTCTGGTCCAGC 358
||| ||||||||||||||||| |||| ||||| |||||||||| || |||||||||||||
Sbjct 317 GCTAAATCTGCTGCTGCTTCTTTAAGAGAAATGTCAGCTACTAGAT-CCTCTGGTCCAGC 375
Query 359 GGATCTCACACTTCTGTTCCAGGAAGCGGCTCAGGGAGCCAAAACTTCCAGAGCACAAAA 418
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 376 GGATCTCACATTTCTGTTCCAGGAAGCGGCTCAGGAAGCCAAAACTTCCAGAGCACAAAA 435
Query 419 CCGAATCTTGAGAGTGATTCTCATATACTGCAGGTCATCCGTGAGACCAACCCATGATTG 478
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 436 TCGAATTTTGAGAGTGATTCTCATGTACTGCAGGTCATCCGTGAGACCAACCCATGATTG 495
Query 479 GCCCATAAATCAGAAGCTTTTCACATTGGATGTTATGTACCTGCACGACAAGTCAGCTCC 538
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 496 GCCTATAAACCAGAAGCTCTTCACATTGGATGTTATGTACCTGCACGACAAGTCGGGTCC 555
Query 539 TGATAATTGTACTCACGATGTGTATGACTCTCTTGTTGATGCTTTAGAGCGTGTTTCGGA 598
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 556 TGATAATTGTACTCACGATGTGTATGACTCTCTTGTTGATGCTATAGAGCGTGTTTCGGA 615
Query 599 GTATGAAGGCTACATCTTTGAGAGCAGTCACGGGCTTGCGCAGTCTGTTTTCAGGCGTAT 658
||||||||| |||||||||||| ||||||| |||||| | ||||||||||||||||||||
Sbjct 616 GTATGAAGGTTACATCTTTGAGGGCAGTCATGGGCTTTCACAGTCTGTTTTCAGGCGTAT 675
Query 659 GTCAACGTTGTTATCACATCCTCCTCAAAGATGTGCTCAAGTTGATCTCCCCAAGCCCTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 676 GTCAACGTTGTTATCACATCCTCCTCAAAGATGTGCTCAAGTTGATCTCCCCAAGCC-TC 734
Query 719 -TGCAAAGAAGCCAGCTGTTTCCTGTGATCAGTCCA-CCTCGGGTTCAAAGAAAGGAGCA 776
|||||||||||||||||||||||||||| | || | |||| | ||||| |||||||||
Sbjct 735 CTGCAAAGAAGCCAGCTGTTTCCTGTGATAAATC-AGCCTCAGATTCAACGAAAGGAGCG 793
Query 777 AAGCAACCGTTAGAAAAAACTTCTAATACAAACACAAAGAGAGTACACAGCCTAGGCAAA 836
||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 794 AAGCAACCGTTAGAAAAAAAACCTAAGACAAACACAAAGAGAATACACAGCCTAGGCAAA 853
Query 837 GAGAAAGCATCTGATCTCAAAAACTATGATGAAAATTTAGTTGGGTCGAGGGTTAAAATC 896
|||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 854 GAGAAAACATCTGATTTCAAAAAGTATGATGAAAAGATAGTTGGGTCGAGGGTTAAAATC 913
Query 897 TGGTGGCCTTTGGATCGCGCGTATTATGAAGCTGTGGTCATTTCATATTATTCTGCTAAA 956
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 914 TGGTGGCCGTTGGATCGCGCGTATTATGAAGCTGTGGTCATTTCATATTGTTCTGCTAAA 973
Query 957 GCGAGACATCGGG 969
| |||||||||||
Sbjct 974 GAGAGACATCGGG 986
Score = 597 bits (323), Expect = 1e-169
Identities = 386/417 (93%), Gaps = 2/417 (0%)
Strand=Plus/Plus
Query 1776 AAAATCCTTGAGATGGTTCAACAACCAGTGGCTGAAGAAGAGGATCTTGCAGAAACTGAG 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1502 AAAATCCTTGAGATGGTTCAACAACCAGTGGCTGAAGAAGAGGATCTTGCAGAAACTAAG 1561
Query 1836 AGTCAGACACACAAGCGAGCGCGAGTCGGAAGTTCCAGCCTTCGTAAAGCTGATGGCGAG 1895
| | ||||| |||||||||| ||||||| ||| |||||| ||| ||||||||||||||||
Sbjct 1562 ACTAAGACATACAAGCGAGCTCGAGTCGAAAGCTCCAGCGTTCATAAAGCTGATGGCGAG 1621
Query 1896 ATGGAGAAGAAAGCTGCAGAAGGAGAACCCTCTTGCCGTTCTCAAAAATCCAGTGCTGAG 1955
||||||||| |||||||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 1622 ATGGAGAAGGAAGCTGCAGAAGGAGAACCCTCTTGCCGGTCCCACAAATCGAGTGCTGAG 1681
Query 1956 CCCGGAGACTCGCAGCGC-AAGAACCTCCCTCAACCTTGCTCTGTCACACAACAGCTGGC 2014
|||||||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1682 CCCGGAGACTTGCAGC-CTAAGAACCTCCCTGAACCTTGCTCTGTCACACAACAGCTGGC 1740
Query 2015 TAAGGTGAAACAGAGCATTTTAGACACTGTAGCCAGTGTAAGACAGTTTCGCTGTGAGCT 2074
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TAAGGTCAAACAGAGCATTTTAGACACTGTAGCCAGTGTAAGACAGTTTCGCTGTGAGCT 1800
Query 2075 GGGGAGAAAGGAACAGAGCATTGTAGATACTTTGAGCATTGTACGACTGTTCCGTTCTGA 2134
|| ||||||||||||||||||| ||| ||||| ||||||||||||| |||||| |||||
Sbjct 1801 GGAAAGAAAGGAACAGAGCATTGCAGACACTTTAAGCATTGTACGACAGTTCCGATCTGA 1860
Query 2135 GATTGAGGAAAAGGAAGACATTCTAGAAGCTTCACTCCTGGAAATTGACGTGTTAGG 2191
||| |||||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 1861 GATCGAGGAAAAGGAAGATATGCTAGAAGCTTCACTCCTGGAAATCGATGTGTTAGG 1917
Score = 499 bits (270), Expect = 4e-140
Identities = 353/390 (91%), Gaps = 17/390 (4%)
Strand=Plus/Plus
Query 1055 GGATAAAGAAGCTAATCAAACGGGATGTGTTGAAGAAGCTTCCACAATGCCCCAGAAGAA 1114
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 985 GGATAAAGAAGCTAATCAAACGGGATGTGATGAAGAAGCCTCCACAATGCCCCAGAAGAA 1044
Query 1115 GAAAGCTAAGACAAGCAAGGAACAGTCAGTTAATAAGCAATCAAAGATGCTTTCACCATT 1174
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1045 GAAAGCTAAGACACGCAAGGAACAGTCAACTAATAAGCAATCAAAGATGCTTTCACCATT 1104
Query 1175 TCCACTTTATGTTAAAAAGGATGACGAGGTCATACATGGAGAGGTTCCCCAAATATCAAG 1234
||||| | |||||||||||||| | || ||||||||||||||||||||
Sbjct 1105 TCCACCTAATGTTAAAAAGGAT------G------AT---GAGGTTCCCCAAATATCAAG 1149
Query 1235 GAGGCAGGCAGAACAAGTTCTCAGTAGCTGTGCTAGCCAGCTCAAAAAGTATCTGACAGA 1294
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 1150 GAGGCAGGCAGAACAAGTTCTCAGTAACTGTGCTAGCCAGATTAAAAAGTATCTGACAGA 1209
Query 1295 AGCAGTGAAATCGTCGAGCGTCCCCTTGGATAAGCACAGTGATGTAGTGGATTCAATATG 1354
||||| ||||| |||||||||| |||| | ||| | ||||||||||||||||||||||||
Sbjct 1210 AGCAGGGAAATTGTCGAGCGTCTCCTTAGCTAATCCCAGTGATGTAGTGGATTCAATATG 1269
Query 1355 TG-AAGGAGCATTTGATGCTTTAAAGCAGGAAGAAGTTGTTGCTAATGAAAAAGAAGACC 1413
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1270 TGGAAGG-GCATTTGATGCTTTAAAGCAGGAAGATGTTGTTGCTAATGAAAAAGAAGACC 1328
Query 1414 GTCAAGGCCCAAGGGAAGCGGCAGTGAAGG 1443
||||||||||||| ||||||||||| ||||
Sbjct 1329 GTCAAGGCCCAAGAGAAGCGGCAGTAAAGG 1358
Score = 217 bits (117), Expect = 5e-55
Identities = 136/145 (94%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 1570 AGGAACAACAGAAAGCAGCAGAAGTTTCTACCCCTGAGCTAACTTGTGTACCTGAGAGGA 1629
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AGGAACAACAGAGAGCAGCAGAAGTTTCTACCCCTGAGCTAACTTGTGTACCTGAGAGGG 1415
Query 1630 AACTGAACCTGGAGCATTCATTAAGTTTTTGTCCTCACGATTCATCTGTCAA-TCCAGCT 1688
||||||||||||||| ||| ||||| |||||||||| |||||||||||||| || ||||
Sbjct 1416 GACTGAACCTGGAGCAGTCACTAAGTGTTTGTCCTCATGATTCATCTGTCAAATC-AGCT 1474
Query 1689 ATTTCTTCTATGAATGAGAATGGAC 1713
|||||||||||||||||||||||||
Sbjct 1475 ATTTCTTCTATGAATGAGAATGGAC 1499
Score = 97.1 bits (52), Expect = 6e-19
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 2221 TAGGGGAGAAGATATCGGGAATCAACAAAATACTCAACTGAAGATCATGAAGTGAATTGC 2280
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 1914 TAGGGGAGAAGATATCGGGAATCAACAAAATCCTCAACTGAAGATCATCAAGTGGATTGC 1973
Query 2281 A 2281
|
Sbjct 1974 A 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113202228975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5