BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944656

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32915.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   313    7e-85


> AT4G32915.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: regulation of translational fidelity; LOCATED 
IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED 
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 
Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr4:15885520-15886980 FORWARD LENGTH=745
Length=745

 Score =  313 bits (169),  Expect = 7e-85
 Identities = 192/202 (95%), Gaps = 6/202 (3%)
 Strand=Plus/Plus

Query  20   AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATCTGCGTCTCCGAATCGCTGCTTCAT  79
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  26   AGCCATGGCGACCAGAGCTTTGCTCGCCGTTATATATGCGTCTCCGAATCGCTGCTACAT  85

Query  80   CTCTCCGAGCAGGATCAAAATCCAATCTTTAA------CTTCTTCAAGTCATTATTACCA  133
            ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||
Sbjct  86   CTCTCCGAGCAGGATCAAAATCCAATCTTTAACTTGTTCTTCTTCAAGTCATTATTACCA  145

Query  134  AAGACAGAGTAGAAAAATCCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTCCTC  193
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  AAGACAGAGTAGAAAAAACCACAGAATAGCTCGAAGTTACTCGTCTGACTCGGATTCCTC  205

Query  194  CGTTCTTCAGCCGCCGGACGTG  215
            |||||||||||||||||| |||
Sbjct  206  CGTTCTTCAGCCGCCGGATGTG  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5