BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944667
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32830.1 | Symbols: AtAUR1, AUR1 | ataurora1 | chr4:15842453... 1465 0.0
AT2G25880.1 | Symbols: AtAUR2, AUR2 | ataurora2 | chr2:11034652... 865 0.0
> AT4G32830.1 | Symbols: AtAUR1, AUR1 | ataurora1 | chr4:15842453-15844536
FORWARD LENGTH=1171
Length=1171
Score = 1465 bits (793), Expect = 0.0
Identities = 879/919 (96%), Gaps = 12/919 (1%)
Strand=Plus/Plus
Query 8 GATCTCTTCTTCCATGGCGATCCCTACGGAGACACAACAACAGGAGAAGGAGGCTTCAGA 67
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 92 GATCTCTTCTTCCATGGCGATCCCTACGGAGACACAACACCAGGAGAAGGAGGCTTCAGA 151
Query 68 ------T------GCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCC 115
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TGCTTCTGCAGCAGCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCC 211
Query 116 TCTTGGCAGAGGAAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACAT 175
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 212 TCTTGGCAGAGGCAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACGT 271
Query 176 TGTCGCTCTAAAGGTTCTTTTCAAGAGCCAGCTTCAACAATCCCAAGTTGAACATCAGCT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TGTCGCTCTAAAGGTTCTTTTCAAGAGCCAGCTTCAACAATCCCAAGTTGAACATCAGCT 331
Query 236 CCGAAGAGAAGTTGAGATCCAGTCTCATCTTCGACACCCCAACATACTCCGGCTTTATGG 295
| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 332 CAGAAGAGAAGTTGAGATTCAGTCTCATCTTCGTCACCCCAACATACTCCGGCTTTATGG 391
Query 296 CTATTTCTATGATCAAAAAAGAGTTTATTTGATACTTGAGTATGCTGCTAGAGGCGAACT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 CTATTTCTATGATCAAAAAAGAGTTTATTTGATACTTGAGTATGCTGCTAGAGGCGAACT 451
Query 356 TTACAAGGAACTTCAGAAATGCAAATACTTCAGCGAGAGACGAGCTGCAACATATGTTGC 415
||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 452 TTACAAGGATCTTCAGAAATGCAAATACTTCAGCGAAAGACGAGCTGCTACTTATGTTGC 511
Query 416 GTCATTGGCGAGGGCTCTCATATATTGCCATGGCAAGCATGTGATACACAGAGATATTAA 475
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 512 CTCATTGGCGAGGGCTCTCATCTATTGCCATGGCAAGCATGTGATACACAGAGATATTAA 571
Query 476 ACCAGAGAATCTGTTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTC 535
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 ACCAGAGAATCTGCTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTC 631
Query 536 GGTACACACATTTAACCGCAGAAGGACGATGTGTGGCACACTAGATTACCTTCCTCCTGA 595
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 632 GGTACACACATTTAACCGAAGAAGGACCATGTGTGGCACACTAGATTACCTTCCTCCTGA 691
Query 596 AATGGTCGAAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCTG 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GATGGTCGAAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCTG 751
Query 656 TTACGAGTTTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACAG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTACGAGTTTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACAG 811
Query 716 AAGGATTGTGCAAGTGGATCTTAAGTTCCCTCCCAAACCAATTGTCTCTGCATCTGCAAA 775
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 812 AAGGATTGTGCAAGTGGATCTCAAGTTCCCTCCCAAACCAATAATCTCTGCATCTGCAAA 871
Query 776 GGATCTCATTAGCCAGATGCTTGTCAAGGAGTCTTCCCAACGTCTGCCATTGCACAAGCT 835
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 872 GGATCTTATTAGCCAGATGCTTGTCAAGGAGTCTTCGCAACGTCTGCCATTGCACAAGCT 931
Query 836 TCTGGAGCATCCGTGGATTGTGCAAAACGCTGATCCTTCCGGAATATACAGAGGTTAAAA 895
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 932 TCTGGAGCATCCGTGGATCGTGCAAAACGCTGATCCTTCTGGAATCTACAGAGTTTAAAA 991
Query 896 ACAAAACACTTTCAGTTCT 914
||||||| ||| | |||||
Sbjct 992 ACAAAACGCTTACTGTTCT 1010
> AT2G25880.1 | Symbols: AtAUR2, AUR2 | ataurora2 | chr2:11034652-11036910
REVERSE LENGTH=1185
Length=1185
Score = 865 bits (468), Expect = 0.0
Identities = 717/838 (86%), Gaps = 14/838 (2%)
Strand=Plus/Plus
Query 59 GGCTTCAGATGCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCCTCT 118
||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||
Sbjct 116 GGCTTCAGAGGCTGCACAAAAGAGATGGACTACAAGCGATTTCGATATCGGAAAGCCACT 175
Query 119 TGGCAGAGGAAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACATTGT 178
||| |||||||| || || || || ||||| || ||||| ||||||||| ||||||||||
Sbjct 176 TGGTAGAGGAAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCGATCACATTGT 235
Query 179 CGCTCTAAAGGTTCTTTTCAAGAGC-CAGCTTCAACAATCCCAAGTTGAACATCAGCTCC 237
||| ||||||||||||| ||| || |||||||||||||| ||||||||||| ||| | |
Sbjct 236 GGCTTTAAAGGTTCTTTTTAAG-GCTCAGCTTCAACAATCTCAAGTTGAACACCAGTTAC 294
Query 238 GAAGAGAAGTTGAGATCCAGTCTCATCTTCGACACCCCAACATACTCCGGCTTTATGGCT 297
|||| ||||| ||||| || ||||||||||| || ||||| || || ||||| || || |
Sbjct 295 GAAGGGAAGTAGAGATTCAATCTCATCTTCGGCATCCCAATATTCTGCGGCTCTACGGTT 354
Query 298 ATTTCTATGATCAAAAAAGAGTTTATTTGATACTT-GAGTATGCTGCT-AGAGGCGAACT 355
| ||||||||||| ||||||||||||||||| || |||||||||| | || || || ||
Sbjct 355 ACTTCTATGATCAGAAAAGAGTTTATTTGAT-TTTGGAGTATGCTG-TAAGGGGTGAGCT 412
Query 356 TTACAAGGAACTTCAGAAATGCAAATACTTCAGCGAGA-GACGAGCTGCAACATATGTTG 414
||| || || |||||||| ||||| ||||||||||| | | ||||| ||||| |||||||
Sbjct 413 TTATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGA-ACGTCGAGCAGCAACTTATGTTG 471
Query 415 CGTCATTGGCGAGGGCTCTCATATATTGCCATGGCAAGCATGTGATACACAGAGATATTA 474
|||||||||| || || ||||| ||||||||||| |||||||| || ||||||||||| |
Sbjct 472 CGTCATTGGCTAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATATAA 531
Query 475 AACCAGAGAATCTGTTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGT 534
|||| || |||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 532 AACCTGAAAATCTGTTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGATTTTGGATGGT 591
Query 535 CGGTACACACATTTAACCGCAGAAGGACGATGTGTGGCACACTAGATTACCTTCCTCCTG 594
| ||||||||||| ||||| |||||||| ||||||||||| | ||||||||||| ||||
Sbjct 592 CAGTACACACATTCAACCGTAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCACCTG 651
Query 595 AAATGGTCGAAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCT 654
| ||||| |||||||| ||||||||||| ||||| ||||| ||||| || || |||||||
Sbjct 652 AGATGGTGGAAAGCGTTGAACATGATGCGAGTGTCGATATATGGAGTCTAGGAATTCTCT 711
Query 655 GTTACGAGTTTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACA 714
| ||||| |||||||||||||| ||||||||||| |||| |||||| ||||| |||||||
Sbjct 712 GCTACGAATTTCTTTATGGTGTTCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACA 771
Query 715 GAAGGATTGTGCAAGTGGATCTTAAGTTCCCTCCCAAACCAATTGTCTC-TGCATCTGCA 773
||||||||| ||||||||||| ||||||||||||||||| ||||| || | ||||||||
Sbjct 772 AAAGGATTGTTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTGTCAT-CATCTGCA 830
Query 774 AAGGATCTCATTAGCCAGATGCTTG-TCAAGGAGTCTTCCCAACGTCTG-CCATTGCACA 831
||||| || |||||||||||| ||| | ||||||||| | |||||| || || |||||||
Sbjct 831 AAGGACCTGATTAGCCAGATG-TTGGTTAAGGAGTCTACGCAACGTTTGGCC-TTGCACA 888
Query 832 AGCTTCTGGAGCATCCGTGGATTGTGCAAAACGCTGATCCTTCCGGAATATACAGAGG 889
||||||| || || |||||||||||||||||||| || || || || | ||||||||
Sbjct 889 AGCTTCTTGAACACCCGTGGATTGTGCAAAACGCAGACCCATCAGGCCTTTACAGAGG 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44658156683
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5