BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944670
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32800.1 | Symbols: | Integrase-type DNA-binding superfamil... 907 0.0
> AT4G32800.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:15819524-15820871 FORWARD LENGTH=1348
Length=1348
Score = 907 bits (491), Expect = 0.0
Identities = 653/725 (90%), Gaps = 36/725 (5%)
Strand=Plus/Plus
Query 1 GCT-TAAACCTTTCTGATTAACAATGGCAAATTCGTCTTCCGACAAGGAGAAGAAGGAAA 59
||| |||| |||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 267 GCTCTAAA-CTTTCTGACTACCAATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAA 325
Query 60 ATAGTAAGCAGCCCGTGTATCGTGGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGG 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 ATAATAAGCAGCCCGTGTATCGTGGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGG 385
Query 120 AGATTCGTGAACC-ACGGAAGAAATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAG 178
||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AGATTCGCGAACCGA-GGAAGAAATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAG 444
Query 179 ATGGCGATGCGTGCTCACGACGTGGCGGCTATGAGTATCAAAGGAAGTTCAGCCATTCTC 238
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 445 ATGGCTATGCGTGCTCACGACGTGGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTC 504
Query 239 AATTTCCCTGAGCTCTCCGATTTT-TTGCCCCGACCCGTTTCGCTCAGCCCTCGCGACGT 297
||||||||||||||||| | || || |||||||||||||||||||||||||| |||||
Sbjct 505 AATTTCCCTGAGCTCTCTAAACTTCTT-CCCCGACCCGTTTCGCTCAGCCCTCGTGACGT 563
Query 298 CAGAGCTGCGGCGACCAAAGCCGCTCTCATGGACTTCGATACGCCGCCGTGTCGTTCAGA 357
||||||||||||||||||||| ||||||||||||||||||||| || ||| |||||| ||
Sbjct 564 CAGAGCTGCGGCGACCAAAGCTGCTCTCATGGACTTCGATACGACGGCGTTTCGTTCGGA 623
Query 358 GACTGAGACGAGCGAAACGAACAAAAGGTCAGAGACTAGCGAAACGAC-GACGTCGGATA 416
|||||||| |||||||||| | | | || || | || ||| | | || | | ||
Sbjct 624 TACTGAGACTAGCGAAACGA-CGAC-G-TC-GA-A-TA---AAATGTCAGA-GA-G--TA 670
Query 417 AAAGGTCAGAGAGTAGCGAAACGGTGTCGTTCTCATCGTCGTCTTCGTTCTCTGTTACGA 476
| | ||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 671 ---G-T--GAGAGTAACGAAACGGTGTCGTTCTCATCGTCGTCTTGGTCCTCTGTTACGA 724
Query 477 GCATTGAGGAAAGTACAGTCTCCGACGATGATCTAGACGCGATCGTTAAGTTACCGAGTC 536
||||||||||||||||||||||||||||| | | |||| |||||| |||||||||||||
Sbjct 725 GCATTGAGGAAAGTACAGTCTCCGACGATC-T-T-GACGAGATCGTAAAGTTACCGAGTC 781
Query 537 TAGGAACGAGTGTAGACGAGTCGAACGAGTTCGTGATTTTTGACTCGTTGGAGGATTTGG 596
|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 782 TAGGAACGAGCCTAAACGAGTCGAACGAGTTCGTGATATTTGACTCGTTGGAGGATTTGG 841
Query 597 TGTACATGCCTCCGTGGTTAAGCGGTACGGAAGAAGAAGAAGTTTTTACGTATAA---CA 653
|||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 842 TGTACATGCCTCGGTGGTTAAGCGGTACGGAAGAAGAAG---TTTTTACGTATAATAACA 898
Query 654 ATGATTCTTCGTTGAATTACTCATCAGTTTTCGAATCTTGGAAACATTTTCCCTGAGAAA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGATTCTTCGTTGAATTACTCATCAGTTTTCGAATCTTGGAAACATTTTCCCTGAGAAA 958
Query 714 AAGAA 718
| |||
Sbjct 959 A-GAA 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5