BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944677
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32750.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1476 0.0
> AT4G32750.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15795985-15798254
REVERSE LENGTH=1475
Length=1475
Score = 1476 bits (799), Expect = 0.0
Identities = 886/927 (96%), Gaps = 9/927 (1%)
Strand=Plus/Plus
Query 2 tttttttttAT-TGCTTCTTTCAATGGCGATCATTGGAGACGCGTTGCGTCAAGCGTTTA 60
||||||||| | || ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 143 TTTTTTTTT-TGTGTTTC-TTCAATGGCGATCATTGGAGATGCGTTGCGTCAAGCGTTTA 200
Query 61 TGCCAAAGCAAGAGTACGAGAGCCTTAGGGAAGAAGATAGAGCCTTGATTAAGCTTCAGA 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 201 TGCCAAAGCAAGAGTACGAGAGCCTTAGGGAAGAAGATAGAGCCTGGATTAAGCTTCAGA 260
Query 121 GGCCCACATTAATGTCTATCGTGGCTTTACTTAGCTTTGTCATCTTCACTTGCACGATCG 180
|||| || ||| | || ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 261 GGCCGACTTTAGTCTCGATCGTGGCTTTCCTTTGTTTTGTCATCTTCACTTGCACGATCG 320
Query 181 TCAGCTTGAAAATTGTATTTCCTTCGAATGTTCTAAAGAGGCCATTTTGCAGCGACGTGA 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 321 TCAGCTTGAAAATTGTATTTCCTTCGAATGTTCTTAAGAGGCCATTTTGCAGCGACATAA 380
Query 241 AGCTACAACCTTTGCCTATCTATGGCAAAGCTCGTGACTCCGATCTGTTTCCCGGTGCTT 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 381 AGCTACAACCTTTGCCTATCTATGGCAAAGCTCGTGACTCCGATCTCTTTCCCGGTGCTT 440
Query 301 TTTACTTGACGGATCAAGAAACTGTGGATTATTACTGGATGGTCGTTTTCGTTCCCTCGA 360
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 441 TTTACTTGACCGATCAAGAAACTGTTGATTATTACTGGATGGTCGTTTTCGTTCCCTCGA 500
Query 361 CCATAATTTTCCTTGTATCATCTGTTTATCTTGTAGCAGGAATTTTTGTGGCTTATTCCG 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CTATAATTTTCCTTGTATCATCTGTTTATCTTGTAGCAGGAATTTTTGTGGCTTATTCCG 560
Query 421 CCCCTCACCGTCATGGGTTTCTAAAAGTAGTTGAAAATAACTACTGTGCTTCAAGAAGAG 480
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 561 CTCCTCACCGTCATGGGTTTCTAAAAGTCGTTGAAAATAACTACTGTGCTTCAAGAAGAG 620
Query 481 GTGGGGTCCGATGTCTGTCAATTCTGAATGTTGTCTTTGCTATCATCTATGGTCTACTTG 540
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 621 GTGGGGTCCGTTGTCTGTCAATTCTGAATGTTGTGTTTGCTATCATCTATGGTCTCCTTG 680
Query 541 CTATATTTCTCGGCTCAAGCCTCCTGACACTAGGAAGCAGCTGTTCTGTGCCTTTGTTTT 600
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 681 CTATATTTCTCGGCTCAAGCCTCCTCACATTAGGAAGCAGCTGTTCTGTGCCTTTGTTTT 740
Query 601 GGTGCTACGAGATTTCTTCATGGGGTTTGGTAATCTTGTATGCTGGAACTGCTTTCTCCC 660
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 741 GGTGCTACGAGATTTCTTCATGGGGTTTAGTAATCTTGTATGCTGGAACTGCTTTCTCCC 800
Query 661 TTAGAAGAAGAGCTGCTTTAACTATTGACGAAGGAGAGTTTGGGAACGGAAATGATCAGG 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 801 TTAGAAGAAGAGCTGCTTTAACTATTGACGAAGGAGAGTTTGGGAACAGAAATGATCAGG 860
Query 721 GCTTGGAGATGCTTGAAGCTAATCCTTTGGAATTCACACCAGACGTTGAAAGACGAGTGA 780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 861 GCTTGGAGATGCTTGAAGCTAATCCGTTGGAATTCACACCAGACGTTGAAAGACGAGTGA 920
Query 781 ACGAGGGGTTTAAAGCATGGATGGGACCATCTTTGTTATCATCTGATGAAGAAGA---CG 837
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 921 ACGAGGGGTTTAAAGCATGGATGGGACCATCTTTATTATCATCTGATGAAGAAGAAGACG 980
Query 838 AACCTGATTTTTACAATGAGGTGCCGAATGTAACTCGTACTCTTTCAAGCAGGCAAAGAT 897
||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 981 AACCTGACTTTTACAATGAAGTGCCGAATGTAACTCATACTCTTTCAAGCAGGCAAAGAT 1040
Query 898 CTTGATTCTTG-AGAA-AAGAATTTGG 922
||||||||||| | || ||||||||||
Sbjct 1041 CTTGATTCTTGCA-AAGAAGAATTTGG 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5