BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944707
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32530.2 | Symbols: | ATPase, F0/V0 complex, subunit C prot... 704 0.0
AT2G25610.1 | Symbols: | ATPase, F0/V0 complex, subunit C prot... 676 0.0
> AT4G32530.2 | Symbols: | ATPase, F0/V0 complex, subunit C protein
| chr4:15693114-15695100 REVERSE LENGTH=1060
Length=1060
Score = 704 bits (381), Expect = 0.0
Identities = 397/405 (98%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 1 gagagagagagagagagagagagagGATGTCTGGTGTGGTTGCTCTTGGTCATGCGAGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GAGAGAGAGAGAGAGAGAGAGAGAGGATGTCTGGTGTGGTTGCTCTTGGTCATGCGAGCT 176
Query 61 CGTGGGGCGCAGCGCTGGTAAGGATCTCGCCGTATACTTTCTCCGCAATCGGAATCGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CGTGGGGCGCAGCGCTGGTAAGGATCTCGCCGTATACTTTCTCCGCAATCGGAATCGCCA 236
Query 121 TCTCGATCGGCGTCTCAGTCCTCGGTGCCGCCTGGGGAATTTACATTACGGGAAGTAGTT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTCGATCGGTGTCTCAGTCCTCGGTGCCGCCTGGGGAATTTACATTACGGGAAGTAGTT 296
Query 181 TGATCGGTGCGGCTATAGAAGCTCCTCGTATCACTTCCAAGAATCTCATCAGTGTCATCT 240
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 297 TGATCGGTGCGGCTATAGAAGCTCCTCGTATTACTTCGAAGAATCTCATCAGTGTCATCT 356
Query 241 TTTGCGAAGCTGTAGCTATATATGGTGTTATTGTTGCAATCATACTGCAAACAAAGTTGG 300
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 TTTGCGAAGCTGTTGCTATATATGGAGTTATTGTTGCAATCATACTGCAAACAAAGTTGG 416
Query 301 AGAGTGTCCCATCTTCAAAGATGTATGACGCTGAGTCTCTTAGAGCTGGATATGCAATCT 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 AGAGTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCT 476
Query 361 TCGCATCTGGAATCATAGTTGGATTCGCCAACCTTGTATGCGGGT 405
| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 TTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGGT 521
Score = 279 bits (151), Expect = 2e-74
Identities = 184/199 (92%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 399 TGCGGGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCTGATGCTCAAAACTCG 458
||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 605 TGCAGGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAACTCC 664
Query 459 ACACTCTTCGTAAAGATTCTTGTGATTGAGATCTTCGGGAGTGCTCTCGGGTTGTTTGGA 518
||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 665 ACACTTTTTGTAAAGATTCTTGTGATCGAGATATTCGGGAGTGCTCTCGGGTTGTTTGGA 724
Query 519 GTTATTGTGGGAATCATTATGTCTGCACAAGCGACATGGCCAACGAAATAGATATAT--- 575
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GTTATTGTGGGAATTATTATGTCTGCACAAGCGACATGGCCAACGAAATAGATATATATA 784
Query 576 ---CCGGTCTGTATATGTT 591
||||||||||||||||
Sbjct 785 TATCCGGTCTGTATATGTT 803
> AT2G25610.1 | Symbols: | ATPase, F0/V0 complex, subunit C protein
| chr2:10901291-10902531 REVERSE LENGTH=868
Length=868
Score = 676 bits (366), Expect = 0.0
Identities = 500/565 (88%), Gaps = 8/565 (1%)
Strand=Plus/Plus
Query 12 agagagagagagagGATGTCTGGTGTGGTTGCTCTTGGTCATGCGAGCTCGTGGGGCGCA 71
||||| ||||||| ||||| ||||| | ||| | ||||||||| || ||||||||
Sbjct 23 AGAGATAGAGAGAAAATGTCCGGTGT-G--GCT-AT--TCATGCGAGTTCATGGGGCGCG 76
Query 72 GCGCTGGTAAGGATCTCGCCGTATACTTTCTCCGCAATCGGAATCGCCATCTCGATCGGC 131
|| ||||| || ||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 77 GCTCTGGTGAGAATCTCCCCGTACACTTTCTCCGCCATCGGAATCGCCATCTCCATCGGC 136
Query 132 GTCTCAGTCCTCGGTGCCGCCTGGGGAATTTACATTACGGGAAGTAGTTTGATCGGTGCG 191
||||| || || ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 137 GTCTCTGTTCTTGGTGCTGCCTGGGGAATTTACATTACCGGAAGTAGTTTGATCGGTGCC 196
Query 192 GCTATAGAAGCTCCTCGTATCACTTCCAAGAATCTCATCAGTGTCATCTTTTGCGAAGCT 251
|| || ||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 197 GCCATTGAAGCTCCTCGAATCACTTCCAAGAATCTCATCAGTGTAATCTTCTGTGAAGCC 256
Query 252 GTAGCTATATATGGTGTTATTGTTGCAATCATACTGCAAACAAAGTTGGAGAGTGTCCCA 311
|| |||||||| ||||||||||| ||||||||| | ||||| |||||||||||||| |||
Sbjct 257 GTGGCTATATACGGTGTTATTGTGGCAATCATATTACAAACGAAGTTGGAGAGTGTACCA 316
Query 312 TCTTCAAAGATGTATGACGCTGAGTCTCTTAGAGCTGGATATGCAATCTTCGCATCTGGA 371
|| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct 317 TCATCAAAGATGTATGATGCTGAGTCTCTAAGAGCTGGATATGCAATCTTTGCTTCTGGA 376
Query 372 ATCATAGTTGGATTCGCCAACCTTGTATGCGGGTTATGTGTAGGAATCATTGGAAGCAGT 431
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ATCATTGTTGGATTCGCAAACCTTGTATGCGGGTTATGTGTAGGAATCATTGGAAGCAGT 436
Query 432 TGTGCATTGTCTGATGCTCAAAACTCGACACTCTTCGTAAAGATTCTTGTGATTGAGATC 491
|| ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 437 TGCGCATTGTCTGATGCTCAGAACTCGACGCTCTTTGTTAAGATTCTTGTGATTGAGATC 496
Query 492 TTCGGGAGTGCTCTCGGGTTGTTTGGAGTTATTGT-GGGAATCATTATGTCTGCACAAGC 550
|| ||||||||||||||||| ||||||||||| || |||| | |||||||| || |||||
Sbjct 497 TTTGGGAGTGCTCTCGGGTTATTTGGAGTTATCGTTGGGATT-ATTATGTCAGCTCAAGC 555
Query 551 GACATGGCCAACGAAATAGATATAT 575
|||||||| || ||||||| ||||
Sbjct 556 TACATGGCCTACAAAATAGAGATAT 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5