BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944715

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23250.1 | Symbols:  | Succinyl-CoA ligase, alpha subunit | ...   106    2e-22


> AT5G23250.1 | Symbols:  | Succinyl-CoA ligase, alpha subunit 
| chr5:7830360-7832843 FORWARD LENGTH=1478
Length=1478

 Score =  106 bits (57),  Expect = 2e-22
 Identities = 75/84 (89%), Gaps = 0/84 (0%)
 Strand=Plus/Plus

Query  256  ACACGAGTCTTCTGTCAAGGTATCACCGGAAAAAACGACACTTTCCACACTGAACAAGCC  315
            ||||| ||| |||| |||||||| |||||||| ||||  || ||||||||||||||||||
Sbjct  257  ACACGTGTCATCTGCCAAGGTATTACCGGAAAGAACGGGACCTTCCACACTGAACAAGCC  316

Query  316  ATTGAATACGACACCAAAATGGTA  339
            |||||||||| |||||||||||||
Sbjct  317  ATTGAATACGGCACCAAAATGGTA  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5