BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944716
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32460.1 | Symbols: | Protein of unknown function, DUF642 |... 1784 0.0
> AT4G32460.1 | Symbols: | Protein of unknown function, DUF642
| chr4:15662799-15665013 REVERSE LENGTH=1489
Length=1489
Score = 1784 bits (966), Expect = 0.0
Identities = 1087/1146 (95%), Gaps = 6/1146 (1%)
Strand=Plus/Plus
Query 1 TTTTGGGTAG-AAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTACT 59
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 130 TTTGGGGTAGAAAAATTCGAAAGAAATGAAAGAGATGGGAGTGATAGTGCTTCTTCTCCT 189
Query 60 TCACTCGTTCTTCTACGTTTCCTTGTGCTTCAATGATGGACTACTACCAAACGGTGACTT 119
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 190 TCACTCGTTCTTCTACGTTGCCTTTTGCTTCAATGATGGACTACTACCAAACGGTGACTT 249
Query 120 CGAACTAGGTCCACGACATTCGGACATGAAAGGAACACAAGTAATCAACATAACAGCAAT 179
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 250 CGAACTCGGTCCACGACATTCGGACATGAAAGGAACACAAGTTATCAACATAACAGCAAT 309
Query 180 CCCAAATTGGGAACTCTCAGGATTCGTCGAGTACATTCCCTCAGGACACAAACAAGGCGA 239
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 310 CCCAAACTGGGAACTCTCAGGCTTTGTCGAGTACATTCCCTCAGGACACAAACAAGGCGA 369
Query 240 CATGATCCTTGTCGTGCCTAAAGGCGCTTTCGCAGTACGCCTAGGCAACGAAGCCTCAAT 299
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 370 CATGATCCTTGTCGTGCCTAAAGGCGCATTCGCAGTACGTCTAGGCAACGAAGCCTCAAT 429
Query 300 CAAACAAAAAATCAGCGTTAA-AAAGGGATCTTACTATTCGATCACGTTCAGTGCTGCTC 358
||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||
Sbjct 430 CAAACAAAAAATCAGCGTTAAGAAAGGG-TCGTACTATTCGATAACGTTCAGTGCTGCTC 488
Query 359 GAACATGCGCACAAGACGAGCGGTTAAACGTTTCTGTGGCTCCTCACCATGCAGTGATGC 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 489 GAACATGCGCACAAGACGAGCGGTTAAACGTTTCCGTGGCTCCTCACCATGCAGTGATGC 548
Query 419 CTATCCAAACAGTGTATAGTAGCTCGGGTTGGGATTTGTATTCATGGGCTTTTAAAGCAC 478
| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 549 CGATACAAACAGTGTATAGTAGCTCAGGTTGGGATTTGTATTCGTGGGCTTTTAAGGCCC 608
Query 479 AAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AAAGTGACTATGCAGATATAGTGATACATAATCCAGGTGTTGAGGAAGATCCTGCTTGTG 668
Query 539 GACCTCTCATTGATGGTGTTGCTATGAGATCCCTTTACCCTCCTCGACCCACCAATAAGA 598
|||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||
Sbjct 669 GACCTCTCATTGATGGTGTTGCTATGCGAGCCCTTTTCCCTCCTCGTCCCACCAATAAGA 728
Query 599 ACATTCTCAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTG 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 ACATTCTAAAGAACGGAGGATTCGAAGAAGGTCCTTGGGTTTTACCAAACATATCATCTG 788
Query 659 GAGTTTTGATTCCACCAAACTCCATTGACGATCACTCTCCTTTACCTGGTTGGATGGTCG 718
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 789 GTGTTTTGATTCCACCAAACTCCATCGACGATCACTCTCCGTTACCTGGTTGGATGGTCG 848
Query 719 AATCTCTTAAAGCCGTCAAATACATTGATTCCGATCATTTCTCCGTTCCACAAGGTCGTC 778
| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 849 AGTCTCTTAAAGCTGTCAAATACATAGATTCCGATCATTTCTCCGTTCCTCAAGGCCGTC 908
Query 779 GCGCCGTGGAACTCGTCGCCGGAAAAGAGAGCGCCGTCGCACAAGTTGTCCGTACAATCC 838
||||||| |||||||||||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 909 GCGCCGTCGAACTCGTCGCCGGGAAAGAAAGCGCCGTCGCACAAGTTGTCCGCACTATCC 968
Query 839 CGGGAAAAACCTACGTCCTCTCTTTCGCCGTCGGAGATGCTAGCAACGCTTGCGCTGGAT 898
| ||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||
Sbjct 969 CTGGAAAAACCTACGTCCTATCCTTCTCTGTCGGAGATGCTAGCAACGCTTGCGCCGGAT 1028
Query 899 CTATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTGCCGTACGAATCGAAAG 958
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1029 CAATGATCGTCGAAGCTTTCGCCGGAAAAGACACGATCAAGGTCCCGTATGAATCGAAAG 1088
Query 959 GGAAAGGAGGATTCAAGCGATCGTCACTGAGATTCGTCGCTGTCTCTGA-TCGGACTAGA 1017
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 1089 GGAAAGGAGGATTCAAGCGATCGTCATTGAGATTCGTCGCTGTCTC-GAGTCGGACTAGA 1147
Query 1018 GTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGATGATTTCTCGAGCTTGTGTGGG 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1148 GTTATGTTCTACAGTACGTTTTACGCGATGAGAAACGACGATTTCTCGAGCTTATGTGGA 1207
Query 1078 CCGGTGATTGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGGCGAG 1137
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1208 CCGGTGATCGACGACGTTAAGCTTCTCAGTGCTCGGAGGCCGTGAGCTTGCGGCGACGAG 1267
Query 1138 TT-ATT 1142
|| |||
Sbjct 1268 TTGATT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5