BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944726
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32360.1 | Symbols: | Pyridine nucleotide-disulphide oxidor... 2355 0.0
> AT4G32360.1 | Symbols: | Pyridine nucleotide-disulphide oxidoreductase
family protein | chr4:15621301-15624923 FORWARD LENGTH=1913
Length=1913
Score = 2355 bits (1275), Expect = 0.0
Identities = 1412/1478 (96%), Gaps = 10/1478 (1%)
Strand=Plus/Plus
Query 7 TTT-AAATTGGTGAAAATGAGTAGATATCTAGCAAGATATATGGTGTCTAGATACTTCTC 65
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTTGAAATTGGTGAAAATGAGTAGATATCTAGCAAGATATATGGTGTCTAGATACTTCTC 293
Query 66 CTCTGTTTCTTCCCGTCCTCTGCACGTTTGCATCGTTGGAAGTGGACCTGCTGGTTTCTA 125
|||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 294 TTCTGCTTCTTCCCGTCCTTTACACGTTTGCATCGTCGGAAGTGGACCTGCTGGTTTCTA 353
Query 126 TACTGCTGACAAGGTATTGAAGGCGCATGAAGGAGCGCATGTAGATATAATCGATCGATT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TACTGCTGACAAGGTATTGAAGGCGCATGAAGGAGCGCATGTAGATATAATCGATCGATT 413
Query 186 ACCTACACCTTTTGGACTTGTTCGGTCTGGTGTTGCCCCTGACCATCCTGAAACTAAGAT 245
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 414 ACCTACACCTTTTGGACTTGTTCGGTCTGGTGTTGCCCCTGATCATCCTGAAACTAAGAT 473
Query 246 TGCCATTAATCAGTTCTCACGTGTGGC-CAAACACGAGCGTTGCTCTTTTTAT-GGGAAT 303
|||||||||||||||||||||||| || ||| ||||||||||| || ||| || ||||||
Sbjct 474 TGCCATTAATCAGTTCTCACGTGTCGCACAA-CACGAGCGTTGTTCGTTT-ATTGGGAAT 531
Query 304 GTAAAGCTTGGATCCGATTTATTGCTTTCTGAGCTGCGGGATTTGTATCATGTGGTTGTA 363
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 532 GTAAAGCTGGGATCGGATTTATCACTTTCTGAGCTGCGGGATTTGTATCATGTGGTTGTG 591
Query 364 CTTGCGTATGGTGCTGAAAGTGACAAAGATCTTGGCATTCCAGGTGAGAGTTTGAGTGGT 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTTGCATATGGTGCTGAAAGTGACAAAGATCTTGGCATTCCAGGTGAGAGTTTGAGTGGT 651
Query 424 ATATACTCTGCAAGAGAATTCGTCTGGTGGTATAATGGGCATCCCGACTACAGTAGTTTG 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 652 ATATACTCTGCAAGAGAATTCGTCTGGTGGTATAATGGGCATCCTGACTACAGTAGTTTG 711
Query 484 AAACCTGACTTGAAAAGGTCCGACACAGCTGTCATTCTTGGCCAGGGTAATGTAGCACTA 543
|||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 712 AAACCTGACTTGAAAACGTCTGACTCAGCTGTCATTCTTGGCCAGGGTAATGTAGCTCTA 771
Query 544 GATGTCGCTCGGATTCTCTTAAGACCGACAACAGAGTTGGCGTCAACTGATATTGCTAGA 603
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 772 GATGTTGCTCGGATTCTCTTAAGACCGACAACAGAGTTGGCGTCAACTGATATTGCTACA 831
Query 604 CATGCTTTATCTGCGCTGGAAGAAAGTTCTATAAGGAAGGTGTATCTCATCGGAAGACGG 663
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CATGCTTTATCTGCGCTGAAAGAAAGTTCTATAAGGAAGGTGTATCTCATCGGAAGACGG 891
Query 664 GGGCCAGTTCAAGCAGCATTGACTGCTAAAGAGCTTCGAGAAGTTCTCGGGATTAAGAAC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GGGCCAGTTCAAGCAGCATTGACTGCTAAAGAGCTTCGAGAAGTTCTCGGGATTAAGAAC 951
Query 724 TTGCAGATTCGAATAAAGGAGATTGACTTGAGTGTAACTCCTGCTGATGAGGAAGAAATG 783
||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 952 TTGCACATTCGAATAAAGCAGACTGACTTGAGTGTAACTCCTGCTGATGAGGAAGAAATG 1011
Query 784 AAAAATAGTAGAGCCAGAAAGAGGATCTATGAATTACTGTCCAAGGCTGCAGCAGCAGCA 843
|||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1012 AAAACTAGTAGAGCCAGGAAGAGGATCTATGAATTATTGTCCAAGGCTGCAGCAGCAGCA 1071
Query 844 GCAGGAACATCAGAAGCAGACCTTGATCAACGAGAGCTGCACTTTGTTTTCTTCCGCCAA 903
| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1072 A-A--AACATCCGAAGCAGACCCTGATCAACGAGAGCTGCACTTTGTTTTCTTCCGCCAA 1128
Query 904 CCTGACCGGTTCTTGGAGTCAGATGAAAGAAAGGGGCATGTTTCGGGTGTAAACTTGGAG 963
||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 1129 CCTGACCAGTTCTTAGAGTCAGATGAAAGAAAGGGACATGTTTCCGGTGTAAACTTGCAA 1188
Query 964 AAAACCATTCTTGAAAGTGTTGGAAGCGGAAAGCAAATTGCAGTTGGTACAGGAGAGTTC 1023
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1189 AAAACCATTCTTGAAAGTGTTGGAACCGGAAAGCAAATTGCAGTTGGTACAGGAGAGTTC 1248
Query 1024 GAGGATCTTAACTGCAGTATAGTGCTGAAGGCCATTGGTTACAAGTCGGTTCCAATCAAT 1083
|||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 1249 GAGGATCTTAACTGCAGTATGGTGCTGAAGGCCATTGGTTACAAGTCTGTTCCAGTCAAT 1308
Query 1084 GGTTTACCTTTTGATCACAAGAAAGGTGTTGTCCCAAATGTAAGGGGTCGAGTGGTTAGT 1143
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1309 GGTTTACCATTTGATCACAAGAAAGGTGTTGTCCCAAATGTAAAGGGTCGAGTGGTTAGT 1368
Query 1144 CAGACGTCAGGAGACATATCACAGACTGAAACC-GGCTTATACGTATGTGGGTGGCTCAA 1202
|| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1369 CACACGTCAGGAGACATATCACAGACTGAA-CCTGGCTTATACGTATGTGGGTGGCTCAA 1427
Query 1203 AAGAGGGCCAGTAGGCATAATTGCCACAAACCTTTACTGTGCCGAAGAAACGGTTGGTAG 1262
|||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1428 AAGAGGACCAGTAGGGATAATTGCCACAAACCTCTACTGTGCTGAAGAAACGGTTGGTAG 1487
Query 1263 CATAAGCGAAGACATTGAAGAAGGTGTTTGTAAGAGCTCAAAAGCAGGAAGCAAAGGACT 1322
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1488 CATAAGCGAGGACATTGAAGAAGGTGTTTGGAAGAGCTCAAAAGCAGGAAGCAAAGGACT 1547
Query 1323 GATGCAATTGCTGGAGAAGAGAAAAGTGAAGAACGTAGAGTTTAGTGGGTGGGAGAAGAT 1382
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1548 GATGCAATTGCTGGAGAAGAGAAAAGTGAAGAAGGTGGAGTTTAGTGGGTGGGAGAAGAT 1607
Query 1383 TGATGCCAAAGAAAAACAAATGGGGATTGAGAAAAACAAACCCAGAGAAAAATTAGTCAC 1442
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1608 TGATGCCAAAGAAAAACAAATGGGGATTGAGAGAAACAAGCCCAGAGAAAAATTAGTCAC 1667
Query 1443 TTGGGAGGATCTTTTAGCAGCAGCAGCCAACTAGGGCC 1480
|||||||||||| |||||||||||||||||||||||||
Sbjct 1668 TTGGGAGGATCTATTAGCAGCAGCAGCCAACTAGGGCC 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5