BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944727
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32350.1 | Symbols: | Regulator of Vps4 activity in the MVB... 3419 0.0
> AT4G32350.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr4:15617466-15620910 FORWARD LENGTH=2635
Length=2635
Score = 3419 bits (1851), Expect = 0.0
Identities = 2115/2245 (94%), Gaps = 8/2245 (0%)
Strand=Plus/Plus
Query 1 GGAATCGTAAGAGATTAAAAAGATGTTTGATGGTATCTTAGGCCGCGGATTTGCTCCCAA 60
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 147 GGAATCGTAACAGATCAAAAAGATGTTTGATGGTTTCTTAGGCCGCGGATTTGCTCCCAA 206
Query 61 GGGAAAACCACTGATAAAACTGACTAAGAATCGGATCGATGTTCTTCGGAGGAAGA-GAA 119
||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 207 GGGAAAACCACTGATAAAACTGACTAAGAATCGGATCGATGTTCTCCGGAGGAAAAGGAA 266
Query 120 CTGCTACGATCAAGTTTCTGAAGAAAGATTTGGCTGATCTGGTCATTAACGGTCATGACC 179
||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 267 -TGCTACGATAAAGTTTCTGAAGAGAGATTTGGCTGATCTGATCATTAACGGTCATGACT 325
Query 180 ACAATGCTTTTAGCAGAGCAGGAGGGCTTCTTGATGAGCTAAGGTATCTGTGGAGTCTTG 239
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 326 ACAATGCTTTTAGCAGGGCAGGAGGGCTTCTTGATGAACTAAGGTATCTCTGGAGTCTCG 385
Query 240 ACTTTGTTGAGCAGACCTGTGATTTCGTTTACAAGCAGCTCTCTACCATGCAAAAGACGC 299
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 386 ACTTTGTCGAGCAGACCTGTGATTTCGTATACAAGCAGCTCTCTACCATGCAAAAGACGC 445
Query 300 CGGAATGTCCAGAAGATTGTCGTCAAGCTGTATCCTCGTTAATGTTTGCAGCCTCGGGAT 359
||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||| ||||
Sbjct 446 CGGAATGTCCAGAAGATTGCCGTGAAGCTATCTCCTCGTTAATGTTTGCAGCCTCTGGAT 505
Query 360 TTTCCGAGTTGCCTGAGCTGCGTGAACTGAGGCAAATGTTTCATGAAAAATACACAGATT 419
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 506 TTTCCGAGTTGCCTGAGCTGCGTGAATTGAGGCAAATGTTTCACGAAAAATACACAGATT 565
Query 420 CACTTGCATTGTTTGTCAACCAAGAGCTTGTTGAGAATATGTCATCAAATCCATTTTCTC 479
|||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 566 CACTTGCATTGTTTGTCAACCAGGAGCTTGTTGAGAATATGTCATCCAAGCCCTTTTCTA 625
Query 480 TGGAGCAGAAAGTGAAGTTAATGGAAGATGTTGCATCGGAGTAT-TCTATTCGTTGGGAT 538
||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 626 TGGAGAAGAAAGTGAAGTTAATGGAAGATGTTGCATTGGAGT-TCTCTATTCGTTGGGAT 684
Query 539 TCTAAAGATTTTGAGAAGAGGATTGTGAGACATAATAGTATTTCAGTAAAGGAGACCCCA 598
||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 685 TCTAAAGATTTCGAGAAGAGGATTGTGAGACAGAATAGTATTTCAGTAATGGAGACCCCA 744
Query 599 AAAAGCACTTACGACATGTACAAGCCTGTTA-ACAGAAACATGGCCTTGCCAAAAAGACA 657
|||||||| |||||| ||| ||||||| || |||||||||||||||||||||||||| |
Sbjct 745 AAAAGCACCAACGACAAGTATAAGCCTG-TAGACAGAAACATGGCCTTGCCAAAAAGAGA 803
Query 658 AGAGTTTGAAGGTTCTGAAAATGGGGTTAGCTTGAACAGAAAAATGGCTGAGGCATCAGA 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 804 AGAGTTTGAAGGTTCTGAAAATGGGGTTAGCTTGAACAGAAAAACGGCTGAGGCATCAGA 863
Query 718 AAGAAGAGATCGTTTGTTTCAATCTGATAAAGAAAGTTATCAGAAGGGTCTCAGAGGAAA 777
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 864 AAGAAGAGATCCTTTGTTTCAATCTGATAAAGAAAGTTATCAGAATGGTCTCAGAGGAAA 923
Query 778 TCATCATGGGCTAACATCTAAAGAAAGGTCAGATAATGTTCGTCACGCCTCCAGATCCGA 837
||| | ||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||
Sbjct 924 TCAGCGTGGGCTAACATATAAAGAAAGGTCAGAGAATGTTCTTCACGCCTCTAGATCGGA 983
Query 838 AAGCAAGGACAATAAGGCAGAAAGGAAAGAGTTTTATTTGCATTCTAAGCAAGACCCTGC 897
|||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 984 AAGCAAAGACAATAAGGCCGAAAGGAAAGAGTTTTATCTGCATTCTAAGCAAAACCCTGC 1043
Query 898 TAGAGAAAAACATCAACCTATTTTCAACGAAGGTGACACTATAGTGATGAAGGTCAACCG 957
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1044 TAGAGAAAAACATCAGCCTATTTTTAACGAAGGTGACACTATAGTGATGAAGGTCAACTA 1103
Query 958 TGAGAATCTCGGTCAAGGGAATGGACATCGGCCTGGTGTAGTTGATGCGCATAAGAAAAC 1017
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1104 TGGGAATCTCGGTCAAGGGAATGGACATCGACCTGGTGTAGTTGATGCGCATAAGAAAAC 1163
Query 1018 CGAGGTTGTTGCCTCAGAAAGGAAAGAGTATTATAT-GCAATCTAAGCAAGAACCTTCTA 1076
|||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 1164 CGAGTTTGTTGCCTCAGAAAGGAAAGAGTTTTAT-TCGCAATCTAAGCAAGAACCTTCTA 1222
Query 1077 GAGAAATACCTCAACCTATTTTTAATGAAGGTGACACTATCGTAATGAAGGTCAAGCATG 1136
|||||| || |||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1223 GAGAAAGACATCAACCTATTTTTAATGATGGTGACACTATTGTAATGAAGGTCAAGCATG 1282
Query 1137 AGAACCACGCTCAAGGGAATGGACATCAAAATGGTGTAGTTGATCTGCATAAGAAAACAG 1196
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1283 AGAACCACGTTCAAGGGAATGGACATAAAAATGGTGTAGTTGATCTGCATAAGAAAATAG 1342
Query 1197 AGGTTATTGCTTCAGAGAAACTTAAGCCTAGCAGCACCAAAAGAGCCGACAAGTTAGTTA 1256
|||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||
Sbjct 1343 AGGTTAATGCTTCAGAGAAACTTAAGTCTAGCAGCAGCAAAAGAGCTGACAAGTTAGTTA 1402
Query 1257 TCGGCTTTAAACAAGAGAGTTTCTTTCAAGGGTACAAACATGAGAAAAATGAAGAGCATG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TCGGCTTTAAACAAGAGAGTTTCTTTCAAGGGTACAAACATGAGAAAAATGAAGAGCATG 1462
Query 1317 CACATCAGAAAGTGAAAGATAATACCTCAAGACCTCCGAAGCCAAGTAGCAAGTCAAAGA 1376
|||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1463 CACATCAGAAAGTGGAAGATAGTACCTCAAGACCTCCGAAGCCAAATAGCAAGTCAAAGA 1522
Query 1377 GAGCGGAATCTATCGATCCAGGTTCGAGACATCGTAATGATCTGGAGAGTAAAGAGAATG 1436
|||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 1523 GAGCGGAATCTATCAATCCAGGTTCGAGACATCATAATGATCGGGAGAGTAAAGAAAATG 1582
Query 1437 CAGTTCTTGTGGGAAAGAGCACGGAAGAAGATCCATATGGTGGTAACGTTAAGGGGGGTG 1496
|||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||| || |
Sbjct 1583 CAGTTCTTGTGGGAAAGAGCACCGAAGAAGATCCATCTGGTGATAATGTTAAGGGTGGAG 1642
Query 1497 TATATGAAAATGATTATGCAAATCCAGCAAGGAAAGTTGAGGAGCGAGAAACAGAGAGAA 1556
||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 AATACGAATATGATCATGCAAATCCAGCAAGGAAAGTTGAGGAGCGAGAAACAGAGAGAA 1702
Query 1557 TGAAATCACCCTTCTACAAATCCCTTCCACCTCCGTATATTAAAAAATCTAGTGCTAAAG 1616
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1703 TGAAATCACCCTTCTACAAATCCCTTCCACCTCCGTATGTTAAAAAATCTATTGCTAAAG 1762
Query 1617 CAAGGAATGAAAAAGCTGAAGCTTCAGATAATCCAAAGGCTCGTTTTGGTGGTGAAGAAG 1676
||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1763 CAAGGCATGAAAAAGCTGAAGCTTTAGATAATCCAAAGGCTCGTTTTGATGGTGAAGAAG 1822
Query 1677 GAAATCATCCAGACAATGATAAGAATGTTTACGGGGCAGAGAGAGGAAATGAAGCAGGTC 1736
|||||||||||||||||| ||| |||||||| |||||||||||| |||||| ||||||||
Sbjct 1823 GAAATCATCCAGACAATGGTAAAAATGTTTATGGGGCAGAGAGACGAAATGGAGCAGGTC 1882
Query 1737 ATCATGAAGTGAATGACATAGATAATCCATCTCTGAAACGGCGAACTAGCAGAAGAAAAC 1796
|||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| |
Sbjct 1883 ATCATGAAGTGAATGACATAGACAATGCATCTCTGAAACGGCAAACTAACAGAAGAAAGC 1942
Query 1797 ACATTGTAGAATCTGGTGGTGATGATCATACAAGAAGCCGAAGAAGGGAAAACGCAAGGA 1856
||||||||||||| || ||||||||||| | ||| |||||||||||||||||| ||||||
Sbjct 1943 ACATTGTAGAATCGGGAGGTGATGATCACATAAGTAGCCGAAGAAGGGAAAACTCAAGGA 2002
Query 1857 AAGGCCTTCAAGTCTTAATTGATGAGGATGAGAAAGACAGTGAGGAGAAGATGATGGATA 1916
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2003 AAGGCCTTCAAGTCTTAATTGACGAGGATGAGAAAGACAGTGAGGAGAAGATGATGGATA 2062
Query 1917 AACTTCTGATGCATTACAGTAAAAAACCTTCAAGTTATGAAAAGGACAATGTGCAACAAG 1976
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 2063 AACTTCTGATGCATTACAGTAAAAAACCTTCAAGCTATGAAAAGGACAATGTGCAAGAAG 2122
Query 1977 AATCCAAAAGCAGACGCACACATCTaaaaaaaGGTGAATCTGATGAAGAGATGATGATTC 2036
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2123 AATCCAAAAGCAGACGTACCCATCTTAAAAAAGGTGAATCTGATGAAGAGATGATGATTC 2182
Query 2037 ATCAACCGGCTCGGTCACGTTCTCTACCCCCTGAACACTTGGCCGGGCCATCTGAACCTA 2096
|||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 2183 ATCAGCCGGCTCGGTCACGGTCTCTACCCGCTGAACAGTTGGCCGGGCCATCTGAACCTG 2242
Query 2097 CAAAAACATTTGCCCGTGCTGCCTCGTTTCAGCCAGAACGTTCGAGTGAAGCTAAGCACG 2156
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2243 CAAAAACATTTGCCCGTGCAGCCTCGTTTCAGCCAGAACGTTCCAGTGAAGCTAAGCACG 2302
Query 2157 TTCACCCCAAGTTACCAAACTATGACGATTTGGCTGCCAGATTTGCAGAGCTTAAAGGAA 2216
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2303 TTCACCCCAAGTTACCAAACTATGACGATTTGGCTGCCAGATTTGCAGAGCTAAAAGGAA 2362
Query 2217 GGTAAATATATGAACAGTTGATGCC 2241
|||||||||||||||||||||||||
Sbjct 2363 GGTAAATATATGAACAGTTGATGCC 2387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111194207175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5