BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944728

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   353    7e-97


> AT4G32342.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G25360.2); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr4:15615184-15616200 REVERSE LENGTH=486
Length=486

 Score =  353 bits (191),  Expect = 7e-97
 Identities = 226/243 (93%), Gaps = 2/243 (1%)
 Strand=Plus/Plus

Query  174  AGCATAAACTGTTTCGGATGCTGCAATAGAGAAAGACCTTTAGTTGTGGAAGTCGATGCG  233
            |||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |
Sbjct  40   AGCATAAACTGTTTCGGATGCTGCAACAGAGAAAGGCGTTTAGTTGTGGAAGTCGATGAG  99

Query  234  CCATCAAAGGGATTCAAAATCCAAGGAAGGGTAGTGAAGAAAGATGGTGGTTCATCAGAT  293
            |||||||||||| ||||||||||||||| | |||||||||||||| ||| ||||||||||
Sbjct  100  CCATCAAAGGGACTCAAAATCCAAGGAAAGATAGTGAAGAAAGATAGTGCTTCATCAGAT  159

Query  294  GGTC-TCTGGAGCACAAGTACATGTGATATGGACCACAATATCACGATTCGGTCCCAATC  352
             | | |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct  160  -GACTTCTGGAGCACAAGTACGTGTGATATGGACCACAATATAACGATTCAGTCCCAATC  218

Query  353  TTCAAACCCGCTTTTTGATCCCCAATGCAGCACAAGCAACTCTACCGAATTTGTGAACCA  412
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  219  TTCAAACCCGCCTTTTGATCCCCAATGCAGCACAAGCAACTCTACCGAATTTGTAAACCA  278

Query  413  TGG  415
            |||
Sbjct  279  TGG  281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22303961268


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5