BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944731
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32320.1 | Symbols: APX6 | ascorbate peroxidase 6 | chr4:156... 1611 0.0
> AT4G32320.1 | Symbols: APX6 | ascorbate peroxidase 6 | chr4:15602721-15605400
FORWARD LENGTH=1212
Length=1212
Score = 1611 bits (872), Expect = 0.0
Identities = 971/1019 (95%), Gaps = 6/1019 (1%)
Strand=Plus/Plus
Query 1 CTCTCGTCCCACCGTTAAAGATGACGACGACGACTGCTTCTCT-TTTGAAGACTTGTCTT 59
||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 37 CTCTCGTCCCACCGTTAAAGATGACGACGACGACTGCTTCTCTGGTT-AAGACTTTTCTG 95
Query 60 TTTGGGTGCGACTCGTCTTCTTCTTTCAAATTCAAATGCAAATTCGAATCTCCCGCGAAA 119
||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 96 TTTCGGTGCGACTCGTTTTCATCTTTCAAATTCAAATGCAAATTCGAATCTCCCGCGAAA 155
Query 120 ACGCGAGTGCTCTCTCCGACGACCGGGAAACATGTTGTCAGATCGTTAAGAGCCTGGCGT 179
|||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||||
Sbjct 156 ACGCGATTGCTCTCTCCGGCGACCGAGAAACATGTTGTCAGATCGTCAAGAGCCTGGCGT 215
Query 180 ATTCGTTG-TATCTCCGATGATCCTGGTTCGAGTCATGTTTTCGTTTCCAGTAGAAGAAA 238
|||||||| | | ||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 216 ATTCGTTGCT-TATCCGATGATCCTGGTTCGAGTCATGTTTTCGTTGCAAGTAGAAGGAA 274
Query 239 AATGGTAGTCTTGTTGTCGACGGTGCAGCTTCTGTCTCATTTGCTTCCGCAAAACGGGAA 298
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 275 AATGGTAGTCTTGTTGTCGACGGTGCAGCTTCTGTCTCATATGCTTCCGCAAAACGGGAA 334
Query 299 CGCAGCTGAGATTTATCTGGTGATGCAAAACGAAATAAGGAAAGTGGTGACAAAGGGTAA 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 335 CGCAGCTGAGATTTATCCGGTGATGCAAAACGAAATAAGGAAAGTGGTGACAAAGGGCAA 394
Query 359 GGCTGCTGGTGTGCTTCGTTTAGTGTTTCATGATGCTGGAACCTTTGAACTGGACGATCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GGCTGCTGGTGTGCTTCGTTTAGTGTTTCATGATGCTGGAACCTTTGAACTGGACGATCA 454
Query 419 TTCTGGTGGCATCAACGGGTCTATTGCTTATGAACTCGAGAGACCTGAAAACACAGGTTT 478
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 455 TTCTGGTGGCATCAACGGATCTATTGCTTATGAACTTGAGAGACCTGAGAACATAGGTTT 514
Query 479 GAAGAAATCCTTAAAGGTTCTAGCAAAAGCAAAGATTAAGGTTGATGAGATACATCCAGT 538
|||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||
Sbjct 515 GAAGAAATCCTTAAAGGTTCTAGCGAAAGCAAAGGTTAAGGTTGACGAGATACAACCAGT 574
Query 539 GTCTTGGGCGGATATGATCTCTGTCGCTGGGTCTGAAGCAGTTTCAATATGTGGCGGCCC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GTCTTGGGCGGATATGATCTCTGTCGCTGGGTCTGAAGCAGTTTCAATATGTGGCGGCCC 634
Query 599 AACAATTCCAGTAGCTTTGGGAAGACTTGATTCAGCGCAACCTGATCCAGAAGGCAAGCT 658
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 AACAATTCCAGTAGTTTTGGGAAGACTTGATTCAGCGCAACCTGATCCAGAAGGCAAGCT 694
Query 659 ACCTCCAGAAACCCTGAGTGCCTCGGGTTTGAAAGAATGCTTCAAAAGAAAAGGATTTTC 718
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 695 ACCTCCAGAAACCCTGAGTGCCTCGGGATTGAAAGAATGCTTCAAAAGAAAAGGATTTTC 754
Query 719 GACCCAGGAGCTTGTTGCCTTATCTGGGGCACATACGATTGGGAGTAAAGGCTTTGGAGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GACCCAGGAGCTTGTTGCCTTATCTGGGGCACATACGATTGGGAGTAAAGGCTTTGGAGA 814
Query 779 TCCGACAGTTTTTGACAATGCATACTACAAAATCCTTCTTGAAAAACCATGGGCATCAAC 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 815 TCCGACAGTTTTTGACAATGCATACTACAAAATCCTTCTTGAAAAACCATGGACGTCAAC 874
Query 839 TTCAAAAATGACCAGCATGGTCGGGCTTCCTTCGGACCATGCCTTAGTGGAGGATGATGA 898
||| || ||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 875 TTCTAAGATGACGAGCATGGTCGGGCTTCCTTCGGATCATGCTTTAGTGCAGGATGATGA 934
Query 899 GTGCTTAAGGTGGGTGAAACTATATGCGGGAGACCAAGACAAGTTCTTCGAAGACTTCAA 958
|||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 935 GTGCTTAAGGTGGGTGAAACGGTATGCAGAAGACCAAGACAAGTTCTTCGAAGACTTCA- 993
Query 959 CAA-TGCTTATATCAAACTAGTTAATTCTGGGGCCAAATGGAATAAGTTATGATGTCTA 1016
||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 994 CAAATGCTTATATCAAACTAGTAAATTCTGGGGCCAAATGGAATATGTTATGATATCTA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50485317735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5