BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944742

Length=624
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25 |...   364    4e-100


> AT3G14400.1 | Symbols: UBP25 | ubiquitin-specific protease 25 
| chr3:4811532-4815515 REVERSE LENGTH=2712
Length=2712

 Score =  364 bits (197),  Expect = 4e-100
 Identities = 250/275 (91%), Gaps = 5/275 (2%)
 Strand=Plus/Plus

Query  262   TGTCGTCAAGGAGATTTTTGGTGGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCATGTGG  321
             |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  755   TGTCGTGAAGGAGATTTTTGGTGGTGCTTTGCAGAGCCAGGTCAAGTGTTTGTCTTGTGG  814

Query  322   TGCCGAGTCAAATACAGCCGATGAGATTATGGATATCAGTCTTGAAATTTTGCATAGTAT  381
             ||| ||||| |||| |||||||||||||||||||||||||||||| |||||||| |||| 
Sbjct  815   TGCGGAGTCTAATAAAGCCGATGAGATTATGGATATCAGTCTTGAGATTTTGCAGAGTAG  874

Query  382   CTCTATCAAGGAGTCTAT-GCaaaaaaaaTTTCAATCAGAGATTTTAGATGGCAACAATA  440
             |||| | |||||||| || ||||||    |||||||||||||||||||||||||||||||
Sbjct  875   CTCTGTGAAGGAGTC-ATTGCAAAAGTTCTTTCAATCAGAGATTTTAGATGGCAACAATA  933

Query  441   AGTATAAATGCGAGACCTGTGATAAACTGGTGACGGCGAGGAAGCAGATGTCGTCTATAC  500
             |||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |  ||||
Sbjct  934   AGTATAGATGCGAGTCCTGTGAAAAACTGGTGACGGCGAGGAAGCAGATGTC-T--ATAC  990

Query  501   TCCAAATGCCTAATATCCTTGTTATCCAATTGAAA  535
             | |||  ||||||||||||||||||||||||||||
Sbjct  991   TGCAAGCGCCTAATATCCTTGTTATCCAATTGAAA  1025



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30090254053


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5