BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944743
Length=2377
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32190.1 | Symbols: | Myosin heavy chain-related protein | ... 3666 0.0
> AT4G32190.1 | Symbols: | Myosin heavy chain-related protein
| chr4:15544878-15547855 FORWARD LENGTH=2692
Length=2692
Score = 3666 bits (1985), Expect = 0.0
Identities = 2201/2306 (95%), Gaps = 12/2306 (1%)
Strand=Plus/Plus
Query 39 TCTCAGGCCATTCGCCTGAATCTTGCTTCCTACTCCTCTCTCTCTCCCTACCAGTATTGT 98
||||||||||||||| ||||||||||||||| |||||||| |||||||| | | ||||||
Sbjct 184 TCTCAGGCCATTCGCTTGAATCTTGCTTCCTTCTCCTCTCCCTCTCCCTGCGATTATTGT 243
Query 99 TCGACAAGAGTAGCAAACCAGAAGCAGAAGAGTCTTGTCGCATTCCCGAGCATTAGAAGG 158
| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 244 TTGACAAGAGTAGTAAACCATAAGCAGAAGAGTCTTGTCGCATTCCCGAGCATTACAAGG 303
Query 159 ACAAAGAGACATGC-TTTACTAAGTGTTCAATCAGTCTTGCACAATACAAGACCCAACAT 217
| |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGAAAGAGACAT-CTTTTACTGAGTGTTCAATCAGTCTTGCACAATACAAGACCCAACAT 362
Query 218 CAATGATAATGGAACAGCTGAGTCTGCTAATGTTCTTTTCGATAAATTATTTGCTCGGAC 277
||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 363 CAACGACAATGGCTCAGCTGAGTCTGCAAATGTTCTTTTCGATAAATTATTTGCTCGGAC 422
Query 278 ACAGAGATTGGAAAGACAAACCAATCAACACTCGGTTTATCCTGACGATGATGATCTGCC 337
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 423 ACACAGATTGGAGAGACAAACCAATCAACACTCGGTTTATCCTGACGATGATGATCTCCC 482
Query 338 CTATTCAAACATTGGGGTGCTTGAGTCTGACCTTGAGGCTGCGCTAGTGGCTTTGTTGAA 397
|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 483 CTATTCAAACCTTGGCGTGCTTGAGTCTGACCTTGAGGCTGCGCTAGTGGCCTTGTTGAA 542
Query 398 AAGGGAAGAGGACTTGCAGGATGCTGAGAGGAAGCTTCTCTCTGATAAAAATAAACTAAA 457
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 543 AAGGGAAGAGGACCTGCACGATGCTGAGAGGAAGCTTCTCTCTGACAAAAATAAACTTAA 602
Query 458 CCAGGCAAAGGAGGAGTTAGAAAAACGTGAGAAAACAATCTCTGAAGCTTCTTTGAAGCA 517
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 603 CCGGGCAAAGGAGGAGTTAGAAAAACGTGAGAAAACAATCTCTGAAGCTTCGTTGAAGCA 662
Query 518 TGAGAGTCTACAAGAGGAGCTGAAGCGGGCTAATGTCGAGTTAGCTTCTCAAGCCAGGGA 577
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 663 TGAGAGTCTACAAGAGGAGCTGAAGCGGGCAAATGTGGAGTTAGCTTCTCAAGCCAGGGA 722
Query 578 GATAGAAGAATTAAAGCATAAACTAAGGGAAAGAGACGAGGAACGTGCTGCTTTGCAATT 637
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 723 GATAGAAGAGTTAAAGCATAAGCTAAGGGAAAGAGACGAGGAACGTGCTGCTTTGCAATC 782
Query 638 GTCCTTGACTTTGAAAGATGAAGAGCTAGAGAAAATGCGTCAAGAGATTGCAAATAGAAG 697
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 783 GTCCTTGACTTTGAAAGAGGAAGAGCTAGAGAAGATGCGTCAAGAGATTGCAAACAGAAG 842
Query 698 CAAGGAGGTTTCTGTGGCCATTTCTGAATTTGAAAGCAAGTCACAACTCTTAAGCAAAAC 757
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 843 CAAGGAGGTTTCTATGGCTATTTCTGAATTTGAAAGCAAGTCACAACTCTTAAGCAAAGC 902
Query 758 CAACGAAGTTGTCAAGAGACAAGAAGGTGAAATACATGCACTTCAGAGAGC-CTTAGAGG 816
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 903 CAACGAAGTTGTCAAGAGACAAGAAGGTGAAATATATGCACTTCAGAGAGCTCTT-GAGG 961
Query 817 AGAAGGAAGAAGAACTAGAGATTTCTAAGGCTACgaagaaacttgaacaagaaaagctca 876
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 962 AGAAGGAAGAAGAATTAGAGATTTCTAAGGCTACGAAGAAACTTGAACAAGAAAAGCTTA 1021
Query 877 gagaaacagaagccaacttgaagaagcagacagaagaGTGGCTGATAGCCCAGGATGAAG 936
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1022 GAGAAACAGAAGCCAACTTGAAGAAACAGACAGAAGAGTGGCTGATAGCCCAGGATGAAG 1081
Query 937 TGAATAAGCTTAAGGAGGAAACAGTGAAACGCTTAGGAGAAGCCAATGAAACCATGGAGG 996
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1082 TGAATAAGCTTAAAGAGGAAACCGTGAAACGTTTAGGAGAAGCCAATGAAACCATGGAGG 1141
Query 997 ACTTCTTGAAAGTGAAAAAGCTACTGACTGATGTGAGATTCGAGCTTATTTCTTCTCGGG 1056
||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1142 ACTTCATGAAAGTGAAAAAGCTTCTGACTGATGTAAGATTCGAGCTTATTTCTTCTCGGG 1201
Query 1057 AAGCTTTGGTATTTTCCAGGGAGCAAATGGAAGAAAAAGAGCTACTATTAGAAAAACAAT 1116
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1202 AAGCTTTGGTATTTTCCAGGGAGCAAATGGAAGAAAAAGAGCTACTATTGGAAAAACAAT 1261
Query 1117 TGGAAGAACTCGAGGAACAGAGGAAAAGTGTGTTGTCATATATGCAAAGCTTGAGGGATG 1176
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TGGAGGAACTCGAGGAACAGAGGAAAAGTGTGTTGTCATATATGCAAAGCTTGAGGGATG 1321
Query 1177 CTCACACTGAAGTAGAGAGTGAGAGAGTAAAGCTCAGAGTTGTTGAGGCTAAGAATTTTG 1236
| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1322 CGCACACTGAAGTTGAAAGTGAGAGAGTAAAGCTCAGAGTTGTTGAGGCTAAAAATTTTG 1381
Query 1237 CGCTTGAGCGGGAAATATCGGTCCAAAAAGAACTGCTGGAGGATTTACGAGAGGAGTTGC 1296
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1382 CGCTTGAGCGGGAAATATCGGTCCAAAAAGAATTGCTGGAGGATTTACGAGAGGAGTTGC 1441
Query 1297 AGAAAGAGAAACCATTGTTGGAGCAAGCTATGCATGATATATCCGTTATTCAAGATGAGC 1356
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1442 AGAAAGAGAAACCATTGTTGGAGCTAGCTATGCATGATATATCCGTTATTCAAGATGAGC 1501
Query 1357 TTTACAAAAAAGCTAACGCGTTTCAGGTATCACAGAATCTACTTCAGGAGAAAGAGTCAA 1416
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1502 TTTACAAAAAAGCTAATGCGTTTCAGGTATCACAAAATCTACTTCAGGAGAAAGAGTCAA 1561
Query 1417 GTTTGGTGGAGGCCAAACTAGAGATTCAGCATCTGAAGTCCGAACAGGCTTCTCTAGAAC 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 GTTTGGTGGAGGCCAAACTAGAGATTCAGCATCTGAAGTCCGAACAGGCTTCTCTAGAAC 1621
Query 1477 TATTACTGCAAGAAAAGGATGAAGAACTCACGGAAGCTCGAAATAAATTGGAAGAAGTGA 1536
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 1622 TATTACTGCAAGAAAAGGATGAAGAACTCGCTGAAGCTCGAAATAAATTGGGAGAAGTGA 1681
Query 1537 ACCGGGAGGTAACAGAGCTAAAGGCACTTATGGTCAGTAAAGAAGATCAGCTTATGGAGG 1596
||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1682 ACCAGGAGGTAACAGAGCTAAAGGCACTTATGATCAGTAGAGAAGATCAGCTTATGGAGG 1741
Query 1597 CAACTGAAATGCTGAAAGAGAAAGATGTCCACCTTCACAGAATAGAAGGTGAGTTGGGCA 1656
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 CAACTGAGATGCTGAAGGAGAAAGATGTCCACCTTCACAGAATAGAAGGTGAGTTGGGCA 1801
Query 1657 GTTCCAAGCTGAAAGTCACTGAAGCTGAAATGGTGGTGGAAAGAATTGCAGAATTGACGA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 GTTCCAAGCTGAAAGTCACTGAAGCTGAAATGGTGGTGGAAAGAATTGCAGAATTGACGA 1861
Query 1717 GCAGATTGCTTATGTCAACCACCGAA-GGTCAAAATCAGAACGCAATGAGGATTAACAAT 1775
|||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1862 ACAGACTGCTTATGTCAACCACC-AACGGTCAAAATCAGAATGCAATGAGGATTAACAAT 1920
Query 1776 GAGATAAGCTTTGACGCAATGCAGCAACCACTAGAGAAACCTCATGATGATTACGGAATG 1835
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 GAGATAAGCATTGACTCAATGCAGCAACCACTAGAGAAACCTCATGATGATTACGGAATG 1980
Query 1836 GAGAACAAACGGCTGGTGATGGAGTTAAGCTTCACCAGAGAAAATCTACGGATGAAAGAA 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 GAGAACAAACGGCTGGTGATGGAGTTAAGCTTCACCAGAGAAAATCTACGGATGAAAGAA 2040
Query 1896 ATGGAAGTTCTAGCGGTGCAGAGGGCTTTGACATTTAAAGACGAAGAGATCAACGTGGTC 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 ATGGAAGTTCTAGCGGTGCAGAGGGCTTTGACATTTAAAGACGAAGAGATCAACGTGGTC 2100
Query 1956 ATGGGAAGATTAGAAGCCAAGGAGCGGGAACTCAAGAAACTGAAAGAAGAAACGATCAAT 2015
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2101 ATGGGAAGATTAGAAGCCAAGGAGCAGGAACTCAAGAAATTGAAAGAAGAAACGATCAAT 2160
Query 2016 GACAGTGAAGATTTGAAAGTGCTCTATGCCTTGGCACAAGAGAGAATAGGGGAGAAAACA 2075
||||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||
Sbjct 2161 GACAGTGAAGATTTGAAAGTGCTATATGCCTTGGCACAAGAGAGAGTCGGGGAAAAAACA 2220
Query 2076 ATGGGTGAGCTAGCCATAGAGAAGCTTCAGCTTGAGGCGGCTCAAC-TTGAAGTTGAAGC 2134
|||||||| || |||||||||| ||||||||||||||| ||| ||| |||||||||||||
Sbjct 2221 ATGGGTGATCTGGCCATAGAGATGCTTCAGCTTGAGGCAGCT-AACCTTGAAGTTGAAGC 2279
Query 2135 TGCAACCAGTGCATTACAGAAGCTTGCAGAAATGAGCACGGAACT-TCTAACTCAAGCTG 2193
||| |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 2280 TGCGACCAGTGCATTACAGAAGCTTGCAAAAATGAGCACGGAACTGT-TAACTCAAGCTG 2338
Query 2194 ACATGAGCATTGAGGCCGACCCAACTTACATTGTAATGCCAGAGAAAGGGTATCCAGAAG 2253
|||||||||||||||||||| ||||| ||| |||||||||||||| ||||||| ||||||
Sbjct 2339 ACATGAGCATTGAGGCCGACACAACTCACACTGTAATGCCAGAGAGAGGGTATTCAGAAG 2398
Query 2254 GAAGTAATGGGTGTATTGCG-GAGGTAAAAACAGAAGTTGTCAGGCTCTGGTCCTTGACA 2312
||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 2399 GAAGTAATGAGTGTCTTG-GTGAGGTAAAAACAGAAGTTGTCAGGCTCTGGTCCTTGACA 2457
Query 2313 GAGAAACTCCTGGAGAATGCAGGAAT 2338
||||||||||||||||| ||||||||
Sbjct 2458 GAGAAACTCCTGGAGAACGCAGGAAT 2483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118021481295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5