BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944745
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43180.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 481 7e-135
> AT2G43180.1 | Symbols: | Phosphoenolpyruvate carboxylase family
protein | chr2:17953497-17955829 REVERSE LENGTH=1717
Length=1717
Score = 481 bits (260), Expect = 7e-135
Identities = 314/340 (92%), Gaps = 3/340 (1%)
Strand=Plus/Plus
Query 121 GATTAA-GTCAACAAATAACTCAATCTGTATCAATTCCGGTGATCGGAGACGGTGGCAAT 179
||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 458 GATCAAGGTCAACAAATTACTCAATCTGTATCAATTCCGGTGATTGGAGACGGTGGCAAT 517
Query 180 GGGTATGGTAATGCTATGAATGTTAAGAGAACCGTCAAAGGATATATTAAAGCTGGCTTC 239
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GGATACGGTAATGCCATGAATGTTAAGAGAACCGTCAAAGGATATATTAAAGCTGGCTTT 577
Query 240 GCAGGAATTATCATCAATGATCAGGTTTGTTGTGAAGATACGAAGAGTGAGATAAGAGTG 299
||||||||||||||||||||| | |||||||||||| |||| |||||||||| |||||||
Sbjct 578 GCAGGAATTATCATCAATGATGAAGTTTGTTGTGAAAATACTAAGAGTGAGAGAAGAGTG 637
Query 300 GCTTCTAGGGAGGAA-CTAGTGATGCATATTAAAGCTGCGGTTGATGCGCGTAGAGAGTG 358
| |||||| |||||| | |||||||| | ||||||||||||||||||| |||||||||||
Sbjct 638 GTTTCTAGAGAGGAAGC-AGTGATGCGTGTTAAAGCTGCGGTTGATGCACGTAGAGAGTG 696
Query 359 TGGTTCCGACATTTTCATTGTAGATCAAACTGATTCCCGAGAAGCGATATCTCTGGAGGA 418
|| ||| |||||| | ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 697 TGATTCGGACATTGTAATTGTAGCTCAAACTGATTCCCGTGAAGCGATATCTCTGGAGGA 756
Query 419 ATCACTCATTAGGGCAAGAGCTTTTACAGATGCTGGAGCT 458
||||||||||||||||||||||||||||||||||||||||
Sbjct 757 ATCACTCATTAGGGCAAGAGCTTTTACAGATGCTGGAGCT 796
Score = 322 bits (174), Expect = 4e-87
Identities = 214/234 (91%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 456 GCTAATATGCTAGAAAGTGGAGGGAAAGTTCCGATACTAAACCCGCTTGAGCTAGAAGAG 515
||||||||||| ||||| ||||| ||| |||| || ||||||||||| ||||||||||||
Sbjct 878 GCTAATATGCTTGAAAGCGGAGGAAAAATTCCAATTCTAAACCCGCTGGAGCTAGAAGAG 937
Query 516 ATTGCATATAAGCTAGTGGCGTATCCAATTTCATTGATTGGAGTATCTATTCAGGCAATG 575
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 938 ATTGGATATAAGCTAGTGGCGTATCCAATTTCATTGATTGGAGTATCTATTCAAGCAATG 997
Query 576 CAGGACGCTCTATTGGCAATTAAGGGTGGTCGAATTCCTTCACCAGGAAGCATGGCGTCT 635
|||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 998 CAGGACGCTCTATTGGCAATCAAGGGTGGGCGAATTCCTCCACCAGGAAGCATGGCGTCT 1057
Query 636 TTTGAAGAAATCGAAGAGATTCTTGGTTTTGAGACATACCTGGAGGAAGAGAAG 689
|| |||||||| | |||||||||||||||||| || ||| ||| |||||||||
Sbjct 1058 TTAGAAGAAATTGGAGAGATTCTTGGTTTTGACACTTACGAGGAAGAAGAGAAG 1111
Score = 296 bits (160), Expect = 3e-79
Identities = 202/220 (92%), Gaps = 12/220 (5%)
Strand=Plus/Plus
Query 691 GCAGTAGCGTCTGTGGTAATCAACGGGTGGC-ACAAGATGATCCAGAACAGAGAGAGGAC 749
|||||||||||| | |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1149 GCAGTAGCGTCTATCGTAATCAACGGGTGGCTA-AAGATGATCCAGAACAGAGAGAGGAC 1207
Query 750 CCGATTGTTGAAGTCATAACACCTGAGGTTTATGATGAACCAAGAAACCCCTTTTCGCGG 809
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1208 CTGATTGTTGAAGTCATAACACCTGAGGTTTATAATGAACCAAGAAACCCCTTTTCGCGG 1267
Query 810 ATCTGGTCACGATCTTTGAGGATCAAAATCAT-GG--G---T---TT-GAGAAACTTGAT 859
|||||||||||||||||||||||||||||||| || | | || |||||||| |||
Sbjct 1268 ATCTGGTCACGATCTTTGAGGATCAAAATCATCGGACGCGATGGGTTTGAGAAACTCGAT 1327
Query 860 GTCAGAATTCCGGCCGGATTCTTGGAAGGTGTCACCAACA 899
||||||||||||||||||||||||||||||||||| ||||
Sbjct 1328 GTCAGAATTCCGGCCGGATTCTTGGAAGGTGTCACAAACA 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5