BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944752
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32130.1 | Symbols: | Protein of unknown function (DUF2012)... 985 0.0
AT2G25310.1 | Symbols: | Protein of unknown function (DUF2012)... 573 7e-163
> AT4G32130.1 | Symbols: | Protein of unknown function (DUF2012)
| chr4:15520031-15522593 REVERSE LENGTH=1039
Length=1039
Score = 985 bits (533), Expect = 0.0
Identities = 624/665 (94%), Gaps = 18/665 (3%)
Strand=Plus/Plus
Query 4 GATCTCCGGACGACGACCATGGCGCCGATTCTCAGATCCACTTCCCTTGTCGCTTTGATC 63
||||| | ||||| |||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 99 GATCTGCTGACGAAGACCATGGCGCCGATTTTCAGATCCACTTCCCTTATCGCTTT--T- 155
Query 64 GTCTGCCAGATTTCTCTCATCTTCTTATTTGCTTCCACTCTTCCGATCTCATCTGGGTCT 123
||| | ||| || ||||||| ||||||||||||||||||||||||||| |
Sbjct 156 -TCT--C-----TCT-TCTTCTTCTTCTTTGCTTCCACTCTTCCGATCTCATCT--G--- 201
Query 124 GAGTCTGAGGATAGTTACACAATCACGGGTAGAGTAAGGATCCCAGCAAGCACCGTGATT 183
| |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||
Sbjct 202 G-GTCTGAGGATAGTTACACGATCACGGGTAGAGTGAGGGTTCCAGCAAGCACCGTGATT 260
Query 184 GGTCATGCAGCTAAATTCTCAAATATCAAAGTTATACTCAATGGTGGGCAGCATGTTACT 243
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 261 GGTCATGCAGCTAAATTCTCAAATATCAAAGTTATACTCAACGGTGGACAGCATGTTACT 320
Query 244 TTCCTCAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCTGGGACTCATCTGATT 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 321 TTCCTCAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCGGGGACTCATCTGATT 380
Query 304 GAAGTTTATGCAATGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCAT 363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GAAGTTTATGCACTGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCAT 440
Query 364 CGTGGAAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTCTTG 423
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 441 CGTGGCAAGGTTCAAGCAACACTTACAGAAACCAGAAGGAGTCTTACTGAGCTGGTTTTG 500
Query 424 GAGCCACTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCTCTGTAATGTCAATT 483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GAGCCATTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCTCTGTAATGTCAATT 560
Query 484 TTGAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCT 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTGAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCT 620
Query 544 AAGTTGATGGAAAACATAGATCCAGAGGAAATGAAGAGCGCACAAGAGCAGATGAGAAGC 603
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 621 AAGTTGATGGAAAACATAGATCCCGAGGAAATGAAGAGCGCACAAGAGCAGATGAGAAGC 680
Query 604 CAAGGAGTGCCTTCACTCACTAGCTTGCTACCCGCTAGCCGCTAAGCGTTAACCAACAGT 663
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 CAAGGAGTGCCTTCACTCACTAGCTTGTTACCCGCTAGCCGCTAAGCGTTAACCAACAGT 740
Query 664 CCAAG 668
|||||
Sbjct 741 CCAAG 745
> AT2G25310.1 | Symbols: | Protein of unknown function (DUF2012)
| chr2:10777101-10779226 REVERSE LENGTH=1071
Length=1071
Score = 573 bits (310), Expect = 7e-163
Identities = 530/631 (84%), Gaps = 35/631 (6%)
Strand=Plus/Plus
Query 18 GACCATGGCGCCGATTC-TCAGATCCACTTCCCT--TGTCGCTTTGATCGTCTGCCAGAT 74
||| ||| || ||| || ||||||||| | ||| | ||||||| ||||||| |||||
Sbjct 106 GACGATGACGTCGA-TCATCAGATCCA-GT-CCTACTCTCGCTTTCATCGTCTTACAGAT 162
Query 75 TT-CTCTCATCTTCTTATTTGCTTCCACTCTTCCGATCT-CATCTGGGTCTGAGTCTGAG 132
|| || |||||||| |||||||||||| |||| | | | ||| |||| |||||||
Sbjct 163 TTGCT-TCATCTTC---TTTGCTTCCACT-TTCC-CT-TGC-TCT---TCTGGGTCTGAG 211
Query 133 GATAGTTACACAATCACGGGTAGAGT-AAGGATCCCAGCAAGCACCGTGATTGGTCATGC 191
||||||||||| || || |||||||| || ||| ||| |||||| ||||||||||||
Sbjct 212 GATAGTTACACCATTACTGGTAGAGTCAA-GATTCCACCAAGCAACGTGATTGGTCACAT 270
Query 192 AGCTAAA-TTCTCAAATATCAAAGTTATACTCAATGGTGGGCAGCATG-TTAC-TTTCCT 248
||| ||| ||||||||| |||||||||||||||||||||| ||| | | |||| ||| ||
Sbjct 271 AGC-AAAGTTCTCAAATGTCAAAGTTATACTCAATGGTGGACAG-AAGATTACGTTT-CT 327
Query 249 CAGGCCGGATGGATACTTTACCTTCCACAAAGTGCCAGCTGGGACTCATCTGATTGAAGT 308
|||||| |||||||||||||| || || ||||||| |||||||||||| ||||||||||
Sbjct 328 CAGGCCTGATGGATACTTTACTTTTCATGAAGTGCCTGCTGGGACTCATTTGATTGAAGT 387
Query 309 -TTATGCAATGGGCTACTTCTTCTCCCCAGTGCGAGTTGATGTTAGTGCTCGGCATCGTG 367
| | |||||||| |||||||| || || || ||||| ||||||||||||||||||||||
Sbjct 388 ATCA-GCAATGGGTTACTTCTTTTCTCCGGTACGAGTAGATGTTAGTGCTCGGCATCGTG 446
Query 368 GAAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTCTTGGAGC 427
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 447 GCAAGGTTCAAGCAACACTAACAGAAACCAGGAGGAGTCTTACTGAGCTGGTTTTGGAGC 506
Query 428 CACTGCGGGCAGAGCAATACTACGAGATGCGAGAACCTTTCT-C-TGTAATGTCAATTTT 485
|| || || ||||||||| || ||||| ||||| |||||| | | || |||| || |
Sbjct 507 CATTGAAGGAAGAGCAATATTATGAGATTCGAGAGCCTTTCAACAT-TA-TGTCGATCGT 564
Query 486 GAAAAGTCCAATGGGTCTTATGGTGGGATTCATGGTCGTTGTCGTGTTCTTAATGCCTAA 545
|||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 565 GAAAAGTCCAATGGGTCTCATGGTGGGATTCATGGTCGTTGTTGTGTTCCTAATGCCCAA 624
Query 546 GTTGATGGAAAACATAGATCCAGAGGAAATGAAG-AGCGCACAAGAGCAGATGAGAAGCC 604
|| ||||||||||||||||||||||| |||||| | ||||||||| | ||||| || |
Sbjct 625 ATTAATGGAAAACATAGATCCAGAGGAGATGAAGCAA-GCACAAGAGGAAATGAGGAGAC 683
Query 605 AAGGAGTGCCTTCACTCACTAGCTTGCTACC 635
|||| |||||||| ||||| |||||| ||||
Sbjct 684 AAGGCGTGCCTTCGCTCACAAGCTTGTTACC 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32300556521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5