BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944758
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32105.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransfer... 496 9e-140
AT4G32110.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransfer... 403 6e-112
> AT4G32105.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransferase
family protein | chr4:15513220-15514087 REVERSE LENGTH=626
Length=626
Score = 496 bits (268), Expect = 9e-140
Identities = 323/349 (93%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 55 TCGTTAACCAAGGGTATGGAGATTGTCATCTAAATGACCTATCTGTGAAACAGTCGAAGA 114
||||||||||||||||||| ||||||||||||||| |||||||||||||||| || || |
Sbjct 179 TCGTTAACCAAGGGTATGGGGATTGTCATCTAAATTACCTATCTGTGAAACAATCAAAAA 238
Query 115 CCGGAAAATTGATTCAGAACAAACCAGAGTGGGAAGTGAGAGTAACAAACCCTTGC-A-A 172
||||||||||| ||||||| ||||| ||||||||||||||||| || ||||||||| | |
Sbjct 239 CCGGAAAATTGGTTCAGAATAAACCGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAACA 298
Query 173 A-TGCAAATTCCAATACACAAAGTTGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCG 231
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATTGCAAATTCCAGTACACGAAGTTGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCG 358
Query 232 CTACCTCGTTGTTGTCGAAATCCGGTGAC-TTGTGTCTCCTCAACGCCGGTAAATTCATC 290
|||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||
Sbjct 359 CTACCTCGTTGTTGTCAAAATCCGGTGACATT-TGTCTCCTCAACGCCGGTAACTTCATC 417
Query 291 TTTCCTCACGTGGACTTCGTTTTCAAATACGTTTGGGACACGAGCTTCGACCTCAAGGTT 350
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 418 TTTCCTCACGTGGACTTCGTTTTCAATTACGTTTGGGACACAAGCTTCGACCTCAAGGTT 477
Query 351 ATCGACGGCGTAATCGTTTGCCCTTAAATTTTCTAGGCGAATTGTTTCG 399
||||||||||| |||||||| |||||| ||||||| ||||||||||||
Sbjct 478 ATCGACGGCGTTATCGTTTGTCCTTAATTTTTCTACCCGAATTGTTTCG 526
> AT4G32110.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransferase
family protein | chr4:15515649-15516452 REVERSE LENGTH=539
Length=539
Score = 403 bits (218), Expect = 6e-112
Identities = 300/338 (89%), Gaps = 11/338 (3%)
Strand=Plus/Plus
Query 55 TCGTTAACCAAGGGTATGGAGATTGTCA-TCTAAATGACCTATCTGTGAAACAGTCGAAG 113
|||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||
Sbjct 94 TCGTTAACCAAGGGTATGGAGATTGT-AGTCTAAATTCCCTATCTGTGAAACAATCGAAA 152
Query 114 ACCGGAAAATTGATTCAGAACAAACCAGAGTGGGAAGTGAGAGTAACAAACCCTTGC-A- 171
|||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||| |
Sbjct 153 ACCGGAAAATTGGTTCAGAACAAACCGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAAC 212
Query 172 AA-TGCAAATTCCA-ATACACAAAGTTGTCATGTGTCGGTTTCCAA-TCGGTTACACCCG 228
|| ||||||||||| | ||||| |||||| |||||||||||| ||| || |||||||||
Sbjct 213 AATTGCAAATTCCAGA-ACACAGAGTTGTTATGTGTCGGTTT-CAACTCAGTTACACCCA 270
Query 229 TCGCTACCTCGTTGTTGTC-GAAATCCGGTGACTTGTGTCTCCTCAACGCCGGTAAATTC 287
||| ||||||||||||| | |||||| |||||| ||||||| ||||||| |||||||||
Sbjct 271 TCGATACCTCGTTGTTG-CTGAAATCTGGTGACGCGTGTCTCGTCAACGCTGGTAAATTC 329
Query 288 ATCTTTCCTCACGTGGACTTCGTTTTCAAATACGTTTGGGACACGAGCTTCGACCTCAAG 347
|| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 330 ATAGTTCCTCACGTGGACATCGTTTTCAAATACGTTTGGGACACAAGCTTCGACCTCAAG 389
Query 348 GTTATCGACGGCGTAATCGTTTGCCCTTAAATTTTCTA 385
|||||||||||||| || |||||| |||||| |||||
Sbjct 390 GTTATCGACGGCGTTATGGTTTGCTATTAAATGTTCTA 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18850405875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5