BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944763
Length=1535
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32060.1 | Symbols: | calcium-binding EF hand family protei... 2433 0.0
> AT4G32060.1 | Symbols: | calcium-binding EF hand family protein
| chr4:15501078-15503593 FORWARD LENGTH=1825
Length=1825
Score = 2433 bits (1317), Expect = 0.0
Identities = 1454/1522 (96%), Gaps = 2/1522 (0%)
Strand=Plus/Plus
Query 1 AGAGAGAGAGGATCATTCATTATGCCCGCCTTATCTCACTACAGATCAGTATCATCTCTA 60
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 AGAGAAACAGGATCATTCATTATGCCCGCCTTATCTCACTACAGATCAGTATCATCTCTA 95
Query 61 CCGTCCGTTGACCGATCCTTCCTTCTCATCCAACGACTCAGGATCCACGGCAGCTCATCT 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 96 CCGTCCGTTGACCGATCATTCCTTCTCATCCAACGACTCAGGATCCACGGCAGCTCTTCT 155
Query 121 TCCTTACCAGAATCTTCTCCTTCTGCGGCTCTTCTTTCCGGCGCCGATCCGTTGAAGCGT 180
||||| || |||||||||||||||||| || |||| |||||||| |||||||||||| ||
Sbjct 156 TCCTTCCCTGAATCTTCTCCTTCTGCGTCTATTCTCTCCGGCGCAGATCCGTTGAAGTGT 215
Query 181 TCCGTCTCTGGCGGTTCTCTTGCTAAATGGATCTCCGGGATTACAGCTGGATCCGCCTTA 240
| |||||||| || |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 216 ACGGTCTCTGGTGGATCTCTTGCTAAATGGATCACCGGGATTTCAGCTGGATCCGCCTTA 275
Query 241 GGGTTTCTCTATTGGTCCTCTGGTTTTTCTGATTCGATCTCTGGTTTGTTTGGTGGGAGT 300
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 276 GGGTTTCTCTATTGGTCCTCTGGTTCTTCTGATTCCATCTCTGGTTTGTTTGGTGGGAGT 335
Query 301 AATTTATTGTCATTTGCTGATAGTTCATCGCCTTCTGTTTGTGGTGTAAAAGTCGGCGAT 360
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 336 AATTTATTGTCCTTCGCTGATAGTTCAACGCCTTCTGTTTGTGGTGTAAAAGTCGGCGAT 395
Query 361 CTGAAACCGAGATCGTTTCTTCCGAAATTGTCGTTGCCTGGTTACAGCTCTGGATTCATC 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CTGAAACCGAGATCGTTTATTCCGAAATTGTCGTTGCCTGGTTACAGCTCTGGATTCATC 455
Query 421 TTCGGAGATGCGTATAGAAGGAAGATCTTCTTCAACTACGAGAAGCGTTTGAGATTACAA 480
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 456 TTCGGAGATGCGTATAGAAGGAAGATCTTCTTCAATTACGAGAAACGTTTGAGATTACAA 515
Query 481 AGTCCTCCCGAAAAGGTTTTCGAGTACTTTGCATCTATTCGAACAGATAAAGGAGAAATA 540
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 516 AGTCCTCCTGAAAAGGTTTTCGAGTACTTTGCATCTGTTCGAACAGATAAAGGAGAAATA 575
Query 541 CTAATGAAACCGGCAGATTTGATGAGAGCAATTGTCCCCGTGTTTCCTCCATCAGAATCT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 576 CTAATGAAACCGGCAGATTTGATGAGGGCAATTGTCCCCGTGTTTCCTCCATCAGAATCT 635
Query 601 CATCTAGTAAGAGAAGGATATTTGACTGGAGAGAGAAATCCCGGTGAACTTAGATGCTCT 660
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 636 CATCTAGTAAGAGAAGGATATTTGACTGGGGAGAGAAATCCTGGTGAACTTAGATGCTCT 695
Query 661 CCTTCCGAGTTCTTCATGCTGTTTGATGTTGATAATGATGGCCTTATATCCTTCAAAGAG 720
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 696 CCTTCCGAGTTCTTCATGCTCTTTGATGTTGATAATGATGGTCTTATATCCTTCAAAGAG 755
Query 721 TATATATTCTTTGTGACATTACTCAGCATTCCTGAATCAAGCTTCGCTGTGGCTTTCAAA 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 756 TATATATTCTTTGTGACATTACTCAGCATTCCTGAATCAAGCTTCGCAGTGGCTTTCAAA 815
Query 781 ATGTTTGATACTGACAACAACGGGGAGATTGACAAAGAAGAGTTTAAGACAGTGATGAGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ATGTTTGATACTGACAACAACGGGGAGATTGACAAAGAAGAGTTTAAGACAGTGATGAGT 875
Query 841 CTGATGCGATCTCAGCATCGACAAGGAATTGGCCACAGAGATGGCCTTCGAACAGGATTA 900
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 876 CTGATGCGATCTCAGCATAGACAAGGAGTTGGCCACAGAGATGGCCTTCGAACAGGGTTA 935
Query 901 CATATGACCGGCTCTGTTGAGGATGGAGGCTTGGTAGAATACTTCTTTGGAAAAGATGGC 960
||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 936 CATATGACCGGTTCTGTCGAGGATGGAGGATTGGTAGAATACTTCTTTGGGAAAGATGGC 995
Query 961 AGTCAAAAACTCAAACATGATAAATTCACTAAGTTTATGAAAGATCTAACTGAAGAGATG 1020
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 996 AGTCAAAAACTGAAACACGACAAATTCACTAAGTTTATGAAAGATCTAACTGAAGAGATG 1055
Query 1021 CTGAGGCTGGAGTTTGGACATTATGACTATAAACAAAGAGGAAATATATCAGCCAAAGAT 1080
|||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 1056 CTGAGGCTGGAGTTTGCACATTATGACTATAAACGAAGAGGAAGTATATCGGCCAAAGAT 1115
Query 1081 TTTGCTTTGTCGATGGTGGCAGCGGCTGATGCAAGCCATTTGAGCAAGCTGCTTGATCGA 1140
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1116 TTTGCATTGTCGATGGTTGCAGCGGCTGATGCAAGCCATTTGAGCAAGCTGCTTGATAGA 1175
Query 1141 GTGGAGAGTCTGA-CTGAACACCCGCATCTCCGGGACATGCGTATCTCACTCAAGGAATT 1199
|| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1176 GTTGAGAGTCTGAGC-GAACACCCGCATCTCCGGGACATGCGTATCTCACTGAAGGAATT 1234
Query 1200 TAAACAGTTTGATGAGCTACGTAGTAAACTTGGACCATTTTCTCTAGCGCTTTTTGCTTA 1259
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1235 CAAACAGTTTGATGAGCTACGTAGTAAACTTGGACCATTCTCTCTAGCGCTTTTTGCTTA 1294
Query 1260 TGGCAAAGCTAATGGTTTACTTACAATGAGAGATTTCAAACGAGCTGCCTCTCAGGTATG 1319
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1295 TGGCAAAGCTAATGGTTTACTTACAATGAAAGATTTCAAACGAGCCGCCTCTCAGGTATG 1354
Query 1320 TGGAGTAACATTGTCAGACAATGTGATAGAGATTGCGTTTCATGTGTTTGACTCAAATCG 1379
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1355 TGGAATAACATTGTCAGACAATGTGATAGAAATTGCGTTTCATGTGTTTGACTCGAATCA 1414
Query 1380 AGATGGGAATTTGAGTGTGGATGAGTTTTTGCGGGTTCTGCATCGAAGAGAGAGGGACAT 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1415 AGATGGGAATTTGAGTGTGGATGAGTTTTTGCGGGTTCTGCATCGAAGAGAGAGGGACGT 1474
Query 1440 GGCACAGCCAATTGCCAAGGGACTGTCTCGGTACTTCTCAGATGGATGGAATGGTTCTAA 1499
||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1475 GGCACAGCCAATTGCAAAAGGATTGTCTCGGTACTTCTCAGATGGATGGAAGGGTTCTAA 1534
Query 1500 GAACTGTTCCTGATCGTGAAGA 1521
||||||||||| ||||||||||
Sbjct 1535 GAACTGTTCCTCATCGTGAAGA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75752622405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5