BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944766
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1175 0.0
> AT4G32030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G80610.1);
Has 63 Blast hits to 59 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 53; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:15490740-15493423
FORWARD LENGTH=1341
Length=1341
Score = 1175 bits (636), Expect = 0.0
Identities = 757/814 (93%), Gaps = 13/814 (2%)
Strand=Plus/Plus
Query 1 TTTGATTAGTGTAAGCATCGATGAAGAAGGTTACATCGTCTAAGATTCCGGTCAAGGATG 60
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 144 TTTGAGTAGTGTAAGCGTCGATGAAGAAGGTTACATCGTCTAAGATTCCGGCCAAGGATG 203
Query 61 ATTGGGTGGCGGTGGCTATGACTGACGACGATTTGGTGGTTGAGCTTCTCTTACGGCTCA 120
|||||||||| || || || ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 204 ATTGGGTGGCTGTAGCGATAACTGACGACGATTTGGTCGTTGAGCTTCTTTTACGGCTGA 263
Query 121 AGCATGCCGGAACGGTAGTGTCGGATAATCCGGCGGTGAATCTGCCTCCGCTACGGTGGG 180
||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||
Sbjct 264 AGCATGCCGGAACGGTAGTGTCGGATAATCCGGCGGTGATTCTCCCTCCGTTGCGGTGGG 323
Query 181 GAATCCGTCAACGACGGTCTCGGTCCTCAAGATTTGGTGGCGGCGGCGGCGTTCTCGTTT 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 324 GAATCCGTCAACGACGGTCTCGTTCCTCAAGATTTGGTGGCGGCGGCGGCGTTCTCGTTT 383
Query 241 CGTTGAAGAAAGATGTGGATTCCGTTAGAGCCAGTCCGAAGACTCCGCTCTCCTGGAGCG 300
| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 384 CCTTGAAGAAAGATGTCGATTCCGTTAGAGCCAGTCCGAAGACTCCTCTCTCGTGGAGCG 443
Query 301 GCGGATCTGGAAGTGGCGGCGGCTCTGCATCTCCTTCCGCCGTAACCGCCGATGGATTCG 360
|||||||||||||||| ||||||||||| | | | | || | |||||||||||||||
Sbjct 444 GCGGATCTGGAAGTGGTGGCGGCTCTGC-T-T-C-T---CC-T-TCCGCCGATGGATTCG 494
Query 361 AAGATACCAGTCGCCAAGCTAGCTGCTCTACATCTACAGGATCCGGATCTAAGGTTTTTC 420
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 495 AGGATAACAGTCGCCAAGCTAGCTGCTCTACATCTACAGGATCTGGATCTAAGGTTTTTC 554
Query 421 CCACAAACGAAATCACCAGTTCTTTCTCCAAGAGATTGAAGAAAAGGAAGTCATCGTCCG 480
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |
Sbjct 555 CCACAAACGAAATCACCAGTTGTTTCTCCAAGAGATTGAAGAAGAGGAAGTCATCTTTTG 614
Query 481 AGCTTAAAAATGAAGAGAACTTGAAGTTGAAGGAGAGACTTGACCTTCAAAAGGAGATTG 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 615 AGCTTAAAAATGAAGAGAACTTGAAGTTGAAGGAGAGACTTGACCTTGAAAAGGAGATTG 674
Query 541 CAAGTCTCCGAGCAACACTCGATGAACAAAACCTTAGGAACCAAAAGTTGAAGAGGATTA 600
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 675 CAAGTCTCCGAGCAACATTCGATGAACAAAACCTTAGGAACCAAAAGCTGAAGAGGATTA 734
Query 601 AGCTTGACTTAAACTCTGGTCGTGTCACGAACAAGAAACCTGTTGATCTGATTCGTAAAT 660
|||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||
Sbjct 735 AGCTTGACTTAAACTCAGGCCGTGTCACAAACAAGAAACCTGTTGATTTGATTCGTAAAT 794
Query 661 CACAACTCGAGCGGCTACAGGAATCAAAGTCATGCAAAACGGGTGACTCGCAAAATCAGG 720
||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||
Sbjct 795 CACAACTCGAGCGGCTACAGGGATCAAAATCTTGCAAAACCAGTGACTCGCAAAATCAGG 854
Query 721 GGAGTTTCTTC-TGCCTCCCTGATCTCAACATGGCACCATCCGAGGACGAGATATTGTAC 779
||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 855 GGAGTTTCTTCGT-CCTCCCTGATCTCAACATGGCGCCATCCGAGGAAGAGATATTGTAC 913
Query 780 GGAACTAGCTAAAA--TGGCCTATCTGAAGATTT 811
|||||||||||||| |||||||| |||||||||
Sbjct 914 GGAACTAGCTAAAAACTGGCCTATATGAAGATTT 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5