BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944768
Length=2399
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4... 3978 0.0
> AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15479524-15485353
FORWARD LENGTH=3468
Length=3468
Score = 3978 bits (2154), Expect = 0.0
Identities = 2320/2398 (97%), Gaps = 19/2398 (1%)
Strand=Plus/Plus
Query 1 AGCCGCTCAATTGGTCAATTATGGAGTCAATAAAGGTTTGCATGAACGCACTGTGCGGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AGCCGCTCAATTGGTCAATTATGGAGTCAATAAAGGTTTGCATGAACGCACTGTGCGGAG 709
Query 61 CAGCGTCTACGTCGGGTGAGTGGAAAAAAGGCTGGCCTATGCGATCCGGTGATTTAGCCT 120
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 710 CGGCCTCTACGTCGGGCGAGTGGAAAAAAGGCTGGCCTATGCGATCCGGTGATTTAGCTT 769
Query 121 CTCTCTGCGATAAGTGTGGGTCTGCATACGAGCAATCCATTTTCTGTGAAGTGTTCCATG 180
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 770 CTCTCTGCGATAAGTGTGGGTGTGCATACGAGCAATCCATATTCTGTGAAGTGTTCCATG 829
Query 181 CCGAGGAATCTGGTTGGAGAGAGTGTAATTCATGTGACAAGCGTCTTCACTGTGGATGCA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CCAAGGAATCTGGTTGGAGAGAGTGTAATTCATGTGACAAGCGTCTTCACTGTGGATGCA 889
Query 241 TTGCTTCTAGATTTATGATGGAGCTTCTAGAGAATGGCGGTGTTACCTGTATAAGTTGCG 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 890 TTGCTTCTAGATTTATGATGGAGCTTCTAGAGAATGGTGGTGTTACCTGTATAAGTTGCG 949
Query 301 CCAAGAAATCCGGACTATTTTCTATGAATGTGAGCCAT-ATATCTAACGGTAGGGACTTC 359
||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||
Sbjct 950 CCAAGAAATCCGGACTAATTTCTATGAATGTGAGCCATGA-ATCTAACGGTAAGGACTTC 1008
Query 360 CCCTCATTTGCTTCAGCAGAGCATGTAGGCAGTGTTCTCGAGAGGACAAATCTCAAGCAC 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1009 CCCTCATTTGCTTCAGCAGAGCATGTAGGCAGTGTTCTTGAGAGGACAAATCTCAAGCAC 1068
Query 420 TTGCTTCACTTTCAAAGAATCGACCCCACTCAATCTTCTCTTCAAATGAAACAAGAAGAA 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1069 TTGCTTCACTTTCAAAGAATCGACCCCACTCATTCTTCTCTTCAAATGAAACAAGAAGAA 1128
Query 480 TCGCTGCTTCCTTCCAGACTAGATGCTCTTAGACACAAAACTGAAAGGAAAGAATTGCAG 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCGCTGCTTCCTTCCAGCCTAGATGCTCTTAGACACAAAACTGAAAGGAAAGAATT---- 1184
Query 540 GAATTATCTGCACAGCCAAACTTGAGCATTTCACTTGGACCTACGCTTATGACAAGCCCA 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 G-----TCTGCACAGCCAAACTTGAGCATTTCACTTGGACCTACGCTTATGACAAGCCCA 1239
Query 600 TTTCATGATGCTGCTGTTGATGACAGAAGTAAGACTAATTCGATTTTCCAACTGGCCCCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TTTCATGATGCTGCTGTTGATGACAGAAGTAAGACTAATTCGATTTTCCAACTGGCCCCT 1299
Query 660 CGGTCCAGGCAGCTGCTTCCAAAACCTGCAAATTCAGCTCCCATTGCTGCTGGCATGGAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 CGGTCCAGGCAGCTGCTTCCAAAACCTGCAAATTCAGCTCCCATTGCTGCTGGCATGGAG 1359
Query 720 CCTAGTGGGAGCCTGGTGTCACAGATTCATGTCGCTCGGCCTCCTCCAGAAGGTCGCGGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 CCTAGTGGGAGCCTGGTGTCACAGATTCATGTCGCTCGGCCTCCTCCAGAAGGTCGCGGG 1419
Query 780 AAGACCCAATTGCTTCCCCGTTATTGGCCTAGGATTACTGACCAAGAGCTGCTGCAATTA 839
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1420 AAGACCCAATTGCTTCCCCGTTACTGGCCTAGGATTACTGACCAAGAGCTGCTGCAATTA 1479
Query 840 TCTGGACAGTATCCTCATCTCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TCTGGACAGTATCCTCATCTCTCAAATTCCAAAATTATACCACTCTTTGAAAAAGTTCTG 1539
Query 900 AGCGCAAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGGCA 959
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 AGTGCGAGCGATGCGGGTCGTATTGGTCGACTGGTTCTTCCGAAAGCATGTGCAGAGGCA 1599
Query 960 TATTTCCCCCCTATCTCTCTACCCGAGGGTCTCCCGTTAAAGATACAAGACATAAAAGGG 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 TATTTCCCCCCTATATCTCTACCCGAGGGTCTCCCGTTAAAGATACAAGACATAAAAGGG 1659
Query 1020 AAAGAATGGGTGTTCCAGTTCAGGTTTTGGCCTAATAATAACAGCAGGATGTACGTTTTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 AAAGAATGGGTGTTCCAGTTCAGGTTTTGGCCTAATAATAACAGCAGGATGTACGTTTTG 1719
Query 1080 GAGGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGTTACATTC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1720 GAGGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGTAACATTC 1779
Query 1140 AGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCAACAAACTCTACA 1199
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1780 AGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCGACGAACTCTACA 1839
Query 1200 GCGACACAGATGTTCAAGGGAAGCAGTGAACCCAATCTAAACATGTTTTCCAACAGCTTG 1259
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1840 GCGACACAGATGTTCAAGGGAAGCAGTGAACCCAATCTGAACATGTTTTCCAACAGCTTG 1899
Query 1260 AATCCGGGATGTGGTGACATCAATTGGTCTAAACTAGAGAAGTCTGAGGACATGGCAAAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 AATCCGGGATGTGGTGACATCAATTGGTCTAAACTAGAGAAGTCTGAGGACATGGCAAAG 1959
Query 1320 GATAACTTATTTCTTCAGTCGTCCCTAACTTCTGCTAGGAAACGGGTTCGGAACATTGGG 1379
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1960 GATAACTTATTTCTTCAGTCGTCCTTAACTTCTGCTAGGAAACGGGTTCGGAACATTGGG 2019
Query 1380 TCTAAGAGCAAGCGTCTGCTCATTGATAGCGTAGATGTTCTGGAACTGAAAATAACTTGG 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 ACTAAGAGCAAGCGTCTGCTCATTGATAGCGTAGATGTTCTGGAACTGAAAATAACTTGG 2079
Query 1440 GAGGAGGCACAGGAACTGTTGCGGCCGCCCCAATCCGCCAAACCCAGCATCTTTACGCTG 1499
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 2080 GAGGAGGCACAGGAGCTGTTGCGGCCTCCCCAATCCACCAAACCCAGCATCTTTACGCTG 2139
Query 1500 GAAAATCAGGATTTTGAAGAATATGACGAACCACCAGTTTTCGGGAAGAGGACCCTTTTT 1559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 GAAAATCAAGATTTTGAAGAATATGACGAACCACCAGTTTTCGGGAAGAGGACCCTTTTT 2199
Query 1560 GTGTCACGTCAAACAGGGGAACAAGAGCAATGGGTGCAGTGTGATGCTTGTGGGAAATGG 1619
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2200 GTCTCACGTCAAACAGGGGAACAAGAGCAATGGGTGCAGTGTGATGCTTGTGGGAAATGG 2259
Query 1620 CGACGGCTGCCTGTGGATATTCTTCTTCCACCAAAGTGGTCGTGCTCTGATAATCTCTTG 1679
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2260 CGACAGCTGCCGGTGGATATTCTTCTTCCACCAAAGTGGTCGTGCTCTGATAATCTCTTG 2319
Query 1680 GATCCTGGCAGGTCTTCATGTTCCGCACCTGATGAGCTCTCTCCTAGAGAACAGGATACA 1739
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2320 GATCCTGGCAGGTCTTCATGTTCCGCACCTGATGAACTCTCTCCAAGAGAACAGGATACA 2379
Query 1740 CTTGTCCGGCAGAGCAAAGAGTTCAAAAGGAGGAGACTGGCATCATCAAACGAAAAGCTA 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 CTTGTCCGGCAGAGCAAAGAGTTCAAAAGGAGGAGACTGGCATCATCAAACGAAAAGCTA 2439
Query 1800 AACCAGTCGCAGGAGGCATCTGCTCTGGATACTTTAGGAAATGCAGGCATCACCACTACC 1859
|||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 2440 AACCAGTCGCAGGATGCATCTGCTCTGAATAGTTTAGGAAATGCAGGCATCACCACAACC 2499
Query 1860 GGTGAACAGGAGGAAATCACGGTGGCAGCCACTACCAAGCACCCAAGACACCGGGCAGGG 1919
|||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 2500 GGTGAACAGGGGGAAATCACGGTTGCAGCCACGACCAAGCATCCAAGACACCGGGCAGGG 2559
Query 1920 TGTTCGTGCATCGTCTGCAGCCAACCACCGAGTGGAAAAGGCAAACACAAGCCGTCATGC 1979
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2560 TGTTCGTGCATCGTCTGCAGCCAACCACCGAGCGGAAAAGGCAAACACAAGCCGTCATGC 2619
Query 1980 ACTTGTACTGTGTGCGAGGCAGTGAAGAGAAGATTCAGAACGCTCATGCTGCGGAAGCGG 2039
||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2620 ACTTGCACTGTGTGCGAGGCAGTGAAGAGACGATTCAGGACGCTCATGCTGCGGAAGCGG 2679
Query 2040 AACAGGGGAGAGGCGGGACAGGCAAGCCAGCAGGCGCAGTCACAGTCAGAGTGCAGGGAC 2099
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2680 AACAAAGGAGAGGCAGGACAGGCAAGCCAGCAGGCGCAGTCACAGTCAGAGTGCAGGGAC 2739
Query 2100 GAGACAGAAGTGGAGAGCATTCCAGCGATTGAACCAGCCGCAGGGGAAAACATCGACTTG 2159
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2740 GAGACAGAAGTGGAGAGCATTCCAGCGGTTGAACTAGCCGCAGGGGAAAACATCGACTTG 2799
Query 2160 AACTCAGATCCGGGGGCTTCCCGAGTAAGCATGATGAGGCTTCTCCAAGCTGCAGCTTTT 2219
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2800 AACTCAGACCCGGGGGCTTCCCGAGTAAGCATGATGAGGCTTCTCCAAGCTGCAGCGTTT 2859
Query 2220 CCTCTGGAAGCATATCTGAAACAAAAGGCTATTTCCAATACGGGAGGAGAACAGCAAAGC 2279
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2860 CCTCTGGAAGCATATCTGAAACAAAAGGCTATTTCCAATACAGCAGGAGAACAGCAAAGC 2919
Query 2280 AGTGATATGGTAAGCACGGAGCAGGGTTCGTCCTCAGCCGCACAAGAA-CATGAGAAAGA 2338
||||||||||| ||||| || || |||||||||||||||||||||||| | |||||||||
Sbjct 2920 AGTGATATGGTCAGCACAGAACACGGTTCGTCCTCAGCCGCACAAGAAAC-TGAGAAAGA 2978
Query 2339 GAAAGACACAAGAAATGGAGCTCATGATCCTGTGAACTAAACAGCTTTGGAATCCTCC 2396
||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2979 ------CACAACAAATGGAGCTCATGATCCTGTGAACTAAACAGCTTTGGAATTCTCC 3030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119125893285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5