BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944771

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31985.1 | Symbols:  | Ribosomal protein L39 family protein ...   372    9e-103
  AT2G25210.1 | Symbols:  | Ribosomal protein L39 family protein ...   231    2e-60 


> AT4G31985.1 | Symbols:  | Ribosomal protein L39 family protein 
| chr4:15469895-15470559 FORWARD LENGTH=385
Length=385

 Score =  372 bits (201),  Expect = 9e-103
 Identities = 216/223 (97%), Gaps = 2/223 (1%)
 Strand=Plus/Plus

Query  4    AATCTCACGACTTCAAGATGCCGTCGCACAAGTCGTTTATGATCAAGAAGAAGCTGGCG-  62
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | 
Sbjct  20   AATCTCACGACTTCAAGATGCCGTCGCACAAGTCGTTTATGATTAAGAAGAAGTTGG-GA  78

Query  63   AAGAAGATGAGACAGAACAGGCCTATTCCCCACTGGATTCGTCTTCGTACCGACAACACC  122
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  79   AAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACC  138

Query  123  ATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAAGTGATA  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  139  ATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAAGTGATA  198

Query  183  AGCCTTCTTAAAGAGCCTTCTTTATCTGTTTGGTTTAGCATTT  225
            |||||||| |||||| |||||||||||||||||||||||||||
Sbjct  199  AGCCTTCTAAAAGAGTCTTCTTTATCTGTTTGGTTTAGCATTT  241


> AT2G25210.1 | Symbols:  | Ribosomal protein L39 family protein 
| chr2:10739855-10740552 FORWARD LENGTH=402
Length=402

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 160/177 (90%), Gaps = 1/177 (1%)
 Strand=Plus/Plus

Query  2    CAA-ATCTCACGACTTCAAGATGCCGTCGCACAAGTCGTTTATGATCAAGAAGAAGCTGG  60
            ||| ||| || ||||||||||||||||||||||||||||| ||||| ||||||||  |||
Sbjct  54   CAAGATCGCAAGACTTCAAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAATTGG  113

Query  61   CGAAGAAGATGAGACAGAACAGGCCTATTCCCCACTGGATTCGTCTTCGTACCGACAACA  120
             |||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  114  GGAAGAAAATGAGGCAAAACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACA  173

Query  121  CCATCAGGTACAATGCCAAGCGCAGGCACTGGCGTAGAACCAAGCTCGGATTCTAAG  177
            |||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||||||
Sbjct  174  CCATCAGGTACAATGCTAAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAG  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5