BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944776

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40090.1 | Symbols: ATATH9, ATH9 | ABC2 homolog 9 | chr2:167...   104    6e-22


> AT2G40090.1 | Symbols: ATATH9, ATH9 | ABC2 homolog 9 | chr2:16737466-16740370 
REVERSE LENGTH=1903
Length=1903

 Score =  104 bits (56),  Expect = 6e-22
 Identities = 74/82 (90%), Gaps = 4/82 (5%)
 Strand=Plus/Minus

Query  1     GATTTCGGAGAAATACTGTGATGCATACATATGTAGCTCTGATACATCTTCTTTGTTGCC  60
             |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1399  GATTTCGGAGAAGTACTGTGATGCATACATCTGTAGCTCTGATACATCTTCTTTGTTGCC  1340

Query  61    --GC--GACTTAATGATCCACA  78
               |   |||| |||||||||||
Sbjct  1339  TTGGATGACTAAATGATCCACA  1318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17593712150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5