BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944778
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31930.1 | Symbols: | Mitochondrial glycoprotein family pro... 1144 0.0
> AT4G31930.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr4:15449630-15450838 REVERSE LENGTH=819
Length=819
Score = 1144 bits (619), Expect = 0.0
Identities = 703/744 (94%), Gaps = 3/744 (0%)
Strand=Plus/Plus
Query 1 CCCT-AACGTCGGCGACGAACCTCCATGGCTCTTCTGCTCCGTACTCTTCAAAAATCACA 59
|||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 10 CCCTAAACGTCGGCGACGAACATCGATGGCTCTTCTGCTCCGTACTCTTCAAAAATCACG 69
Query 60 CATTTCTCCTTCTCATTCCTCAAGAACCCTAATTTCCTGGGTTCGATGTAAATCTCTGTT 119
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 70 CATTTCTCCTTCTCATTCCTCAAGAACCCTAATTTCTTGGGTTCGATGCAAATCTCTCTT 129
Query 120 ACCAAATCCCCAATCACGAGACATCACCACCTCGACC-GCTAAATCACCATTCCAGTCCA 178
||||||| ||||||||||||| ||||||| ||| || ||||||||||| |||| |||||
Sbjct 130 GCCAAATCACCAATCACGAGACGTCACCACATCG-CCAGCTAAATCACCCTTCCGGTCCA 188
Query 179 ACATCCTTCGAATCATAAGAAACGAGATCGAGTATCAATCCGATTATGCTCCTCCGCATC 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 ACATTCTTCGAATCATAAGAAACGAGATCGAGTATCAATCCGATTATGCTCCTCCGCATC 248
Query 239 AGCCAGCGACTGAATTTAAATCGTTCTCTGTCGAGGATTGTCCCGGTGAACAATGCATTG 298
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 249 AGCCAGCGACTGAATTCAAATCGTTCTCTGTGGAGGATTGTCCCGGTGAGCAATGCATTG 308
Query 299 TGATGAAAGGGAAGTGCGGAGAAGATGAGAATATCAAAATGGAAGCAACCATGTTTGATG 358
||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 309 TGATGAAAGGGAAGTTTGGAGAAGATGAGGATATCAAAATGGAAGCAACTATGTTTGATG 368
Query 359 GGTTTATGACTGTTCCAAGAACTGGTTTAGATGCTTCAGGGCGCGATGTCCGTCTTCACA 418
||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||| |
Sbjct 369 GGTTTATGAATGTTCCAAGAGCCGGTTTAGATGCTTCAGGGCACGATGTCCGTCTTCATA 428
Query 419 TTAGCTTGCTTGTCGACATTTCTAAGGTTGATGGAAGTGAAGAGTTCGAGTTCCTTTGCT 478
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 429 TTAGCTTGCTTGTTGACATTTCCAAGGTTGATGGAAGTGAAGAGATCGAGTTCCTTTGCT 488
Query 479 CCGTCTGGCCTAACCGTATTGAAATTCAAAAGCTTTACAAGCTTAGACGCAACAAATTCA 538
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 489 CCGTCTGGCCTAACCGTATTGAAATTCGAAAGCTTTACAAGCTTAGACGCAACAAAATCA 548
Query 539 CGGGTCAGCCTTACATGGGACCAAATTTCGGGAATTTGAAGTATGATTTTCAGACAGCGA 598
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 549 CTGGTCAGCCTTACATGGGACCTAATTTTGGGAATTTGAAGTATGATTTTCAGACAGCGA 608
Query 599 TCCGGGAGTTTTTACGAGTAAGAGGAATCGACTCAGAGCTTTGTTTTTTCTTGCATGAAT 658
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 609 TTCGGGAGTTTTTACGAGTAAGAGGAATCGACGCAGAGCTTTGTTTTTTCTTGCATGAAT 668
Query 659 ATATGATGAATAAGGATAGGATTGAACTCATTCAATGGTTGAGAAAGCTAAATTCATTCA 718
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 669 ATATGATGAATAAGGATAGGATTGAGCTCATTCAATGGTTGAGAAAGCTAAATTCATTCA 728
Query 719 TCGCACAATAAACACGAAATTTTT 742
|| ||||||||||||||||| |||
Sbjct 729 TCTCACAATAAACACGAAATATTT 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5