BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944781
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31910.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2211 0.0
> AT4G31910.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr4:15441082-15443900 FORWARD LENGTH=1624
Length=1624
Score = 2211 bits (1197), Expect = 0.0
Identities = 1356/1431 (95%), Gaps = 18/1431 (1%)
Strand=Plus/Plus
Query 1 CATTCAACTCTTATACACACATGCACATGTTAATGGCGACAGGTATCGATATAATCCAAA 60
||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||
Sbjct 25 CATTCAACTCTTATACA-ATATGCCCATGTTAATGGCGACACGTATCGATATAATCCAAA 83
Query 61 AGCTTAATGTATATCCAAGGTTTCAAGACCATGACAAGAAGAAACTAATCACTCTCTCCA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 84 AGCTTAATGTATATCCAAGGTTTCAAAACCATGACAAGAAGAAACTAATCACTCTCTCCA 143
Query 121 ATTTGGACCGTCAATGTCCTTTACTCATGTACTCGGTCTTCTTCTACAAGAATACCACAA 180
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 144 ATTTGGACCGTCAGTGTCCTTTACTCATGTACTCTGTCTTCTTCTACAAGAATACCACAA 203
Query 181 CTCGTGACTTTGACTCCGTCTTCTCCGACCTGAAGCTCGGGCTGGAGGAGACTCTTTCTG 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 204 CTCGTGACTTTGACTCCGTCTTCTCCAACCTGAAGCTCGGGCTGGAGGAGACTATGTCTG 263
Query 241 TGTGGTATCCCGCGGCAGGGAGGCTGGGCTTGGACGGAGTTGGCTGCAAGCTCAACATCC 300
|||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||
Sbjct 264 TGTGGTATCCCGCGGCAGGGAGACTGGGTTTGGACGGAGGTGGCTGCAAGCTCAACATCC 323
Query 301 GGTGTAATGATGGTGGCGCAGTCATGGTGGAGGCGGTGGCGACAGGTGTCAAGTTGTCCG 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GGTGTAACGATGGTGGCGCAGTCATGGTGGAGGCGGTGGCGACAGGTGTCAAGTTGTCCG 383
Query 361 AGCTTGGTGATTTGACTCAGTACAATGAGTTATATGAGAATTTGGTTTACAAGCCTTCCT 420
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 384 AGCTTGGTGATTTGACTCAGTACAATGAGTTTTATGAGAATTTAGTTTACAAGCCTTCCT 443
Query 421 TTGATGGTGATTTCTCTGTAATGCCTCTTGTTGTTGCTCAGGTGACAAGATTTGCATGTG 480
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TGGATGGTGATTTCTCTGTGATGCCTCTTGTTGTTGCTCAGGTGACAAGATTTGCATGTG 503
Query 481 GAGGTTACTCAATTGGAATCGGTACAAGCCACTCACTATTTGATGGAATCTCAGCTTACG 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 504 GAGGTTACTCAATTGGAATCGGTACAAGCCACTCTCTATTTGATGGAATCTCAGCTTACG 563
Query 541 AATTCATTCACGCGTGGGCTTTCAACTCTCACATTAACAACAAATCCAATGGCAAGATTA 600
||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||
Sbjct 564 AATTCATTCACGCGTGGGCCTCCAACTCTCACATTCACAACAAATCCAACAGCAAGATTA 623
Query 601 CTAATAAAAAGGATA-ATTTGGTCATCAAACCGGTTCATGATCGAGGAAATCTACT-GTT 658
||||||||||||| | || |||||||||||||||||||||||||| |||||||||| |||
Sbjct 624 CTAATAAAAAGGA-AGATGTGGTCATCAAACCGGTTCATGATCGACGAAATCTACTGGTT 682
Query 659 GAACCGGGACGCTATCCGAGTAACCAATGCTGCAGCCATTTGTCATCTGTACCAGTTGAT 718
|||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 683 -AACCGGGATGCTGTCCGAGAAACCAATGCTGCAGCCATTTGTCATCTGTACCAGTTGAT 741
Query 719 CAAACAGGCGATGATGA-CTCATCAGGAGCAAAACCGTAAATTTGAGTTACCAGACTCTG 777
||||||||||||||||| || ||||||||||||||||||| || ||||||||||||||||
Sbjct 742 CAAACAGGCGATGATGACCT-ATCAGGAGCAAAACCGTAACTTAGAGTTACCAGACTCTG 800
Query 778 GTTTTGTGATCAAAACGTTCGAGCTTAATGGCGAAGCGATAGAAAGCATGAAGAAGAAAT 837
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 801 GTTTTGTGATCAAAACGTTCGAGCTTAATGGCGATGCGATAGAAAGCATGAAGAAGAAAT 860
Query 838 CACTAGAAGGGTTCTTGTGCTCCTCCTTTGAGTTTCTTGCTGCTCATTTGTGGAAGGCAA 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 CACTAGAAGGGTTCATGTGCTCCTCCTTTGAGTTTCTTGCTGCTCATTTGTGGAAGGCAA 920
Query 898 GAACAAGGGCTTTAGGGTTGAGGAGAGACGCCATGGTGTGTCTACAATTCGCGGTGGACA 957
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 921 GAACAAGGGCTTTAGGGTTGAGGAGAGACGCCATGGTGTGTTTACAATTCGCAGTGGACA 980
Query 958 TAAGGAAGAGGACGGAG-CGGCCGCTGCCAGAAGGATTTTCCGGCAACGCCTATGTGCTT 1016
||||||| || |||||| | |||||||||||||| |||||||||||||| || ||||||
Sbjct 981 TAAGGAAAAGAACGGAGACA-CCGCTGCCAGAAGGGTTTTCCGGCAACGCATACGTGCTT 1039
Query 1017 GCCTCGGTGGCATCCACCACCAGAGAATTACTCGAAGAACTAACACTCGAGTCAATAGTC 1076
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1040 GCCTCGGTGGCATCCACCGCCAGAGAATTACTTGAAGAGCTAACACTCGAGTCAATAGTC 1099
Query 1077 AACAAGATTAGAGAAGCCAAGAAGTCAATTGACCAAGATTACATCAACTCTTACATGGAA 1136
|||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 1100 AACAAGATCAGAGAAGCCAAGAAATCAATTGACCAAGGTTACATAAACTCTTACATGGAA 1159
Query 1137 GCACTCGGAGGTGGTGATCAAAGTAATGACGGAAATCTCCCTCCTCTCAAAGAGCTAACC 1196
|||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GCACTCGGAGGT----A-----GTAATGACGGAAATCTCCCTCCTCTCAAAGAGCTAACC 1210
Query 1197 CTAATCTCCGACTGGACAAAAATGCCATTTCACAATGTTGGCTTTGGCAACGGCGGGGAG 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1211 CTAATCTCCGACTGGACAAAAATGCCATTTCACAATGTTGGCTTTGGCAACGGCGGCGAG 1270
Query 1257 CCAGCGGATTACGTGGCACCACTGTGTCCACCTGTGCCACAAGTTGCTTATTTCATGAAG 1316
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1271 CCAGCGGATTACATGGCCCCACTGTGTCCACCGGTGCCACAAGTTGCTTATTTCATGAAG 1330
Query 1317 AACCCTAAAGATGCTAAAGGTGTTCTTGTGAGGATTGGTTTGGACCCAAGAGATGTTAAT 1376
|||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1331 AACCCTAAAGATGCCAAAGGTGTTCTTGTGAGGATTGGCTTGGACCCACGAGATGTTAAT 1390
Query 1377 GATTTTTCAGATCATTTCCTTGATTGCTAATATATTAGCTGGTGATAATTA 1427
| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GGCTTTTCAAATCATTTCCTTGATTGCTAATATATTAGCTGGTGATAATTA 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70330963545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5