BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944795

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31830.1 | Symbols:  | unknown protein; Has 42 Blast hits to...   523    4e-148


> AT4G31830.1 | Symbols:  | unknown protein; Has 42 Blast hits 
to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:15400604-15401147 REVERSE 
LENGTH=544
Length=544

 Score =  523 bits (283),  Expect = 4e-148
 Identities = 319/337 (95%), Gaps = 0/337 (0%)
 Strand=Plus/Plus

Query  5    TGAAGAAAGCATAAGCATGGCTGGAGAAGATGACTGGAGGAAAACGGCAGATACGACAAA  64
            ||||||| ||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||
Sbjct  27   TGAAGAAGGCATAAGCATGGCCGGAGAAGAAGACTGGAGAAAAACAGCAGATACGACGAA  86

Query  65   GATGAGCTCGGAGGGAGTGAAAGCAGCCGGCGTTGAGTCATCCAAGAGGCCGCCAGGAAG  124
            |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct  87   GATGAGCTCGGAGGGAGTAAAAGCTGCCGGCGTTGAGTCATCAAAGAGGCCGCCAGGAAG  146

Query  125  TAATCCAGGTGGTGTTCTTCACCAACGCCGTAACTTGCCATACAGTTACACCACGATGGC  184
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  147  TAATCCAGGTGGTGTTCTTCATCAACGCCGTAACTTGCCATACAGTTACACGACGATGGC  206

Query  185  TCTAGCCGGATTAGCTATCTCTGGTGCCATCATGTACACTGTAATGTATGCTAAGAAAAA  244
            ||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct  207  TCTAGCCGGATTAGCTATCTCGGGGGCCATCATGTACACTGTTATGTATGCTAAGAAGAA  266

Query  245  GCCGGAAGCTACTGCCACTGATGTAGCTAAGGCTGCCACAGGGACAGCTAAACCCGAAGA  304
            ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  267  GCCGGAAGCCACTGCCACTGATGTAGCTAAGGCTGCCACAGGGACGGCTAAACCTGAAGA  326

Query  305  TACACATCCAAGAAAGTAAAATTTCAAGGGAAGAATT  341
            |||||||||||||||||||||||||||||||||||||
Sbjct  327  TACACATCCAAGAAAGTAAAATTTCAAGGGAAGAATT  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5