BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944801
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31780.2 | Symbols: MGD1, MGDA | monogalactosyl diacylglycer... 2715 0.0
> AT4G31780.2 | Symbols: MGD1, MGDA | monogalactosyl diacylglycerol
synthase 1 | chr4:15373999-15377134 FORWARD LENGTH=1998
Length=1998
Score = 2715 bits (1470), Expect = 0.0
Identities = 1589/1647 (96%), Gaps = 6/1647 (0%)
Strand=Plus/Plus
Query 3 tctctctctctATCAAATATGCAAAACCCTTCAACGGTAACCCAGGAATCAGCGGCACCG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 206 TCTCTCTCTCTATCAAATATGCAAAACCCTTCAACGGTAACCCAGGAATCAGCCGCACCG 265
Query 63 GTCTTTGATTTCTTCCCACGGCTCAGAGGTTTTGCCTCTCGAAATCGATCTCCGTGTTCG 122
|||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 266 GTCTTTGATTTCTTCCCACGGCTCAGAGGTTTAACCTCTAGAAATCGATCCCCGTGTTCG 325
Query 123 ATTTCAGATGGGTACGCTCTCTCATCGTCCAATGCCTTGTACTTCAATGGCTTCCGGACT 182
| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 326 AATTCAGATGGGTATGCTCTCTCATCGTCCAATGCCTTGTACTTCAATGGTTTCCGGACT 385
Query 183 TTACCCTCCCGAAGGACGGGAAAAACCCTAGCTT-CTCTGAGCTTCAACACTAAGAGCAG 241
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 386 TTACCCTCCCGAAGGATGGGAAAAACCCTAGCTTCCT-TGAGCTTCAACACTAAGAGCAG 444
Query 242 TGCCGGTTCGAGTCTGCGTAGGTTTATCAGCGATTTCAATAGCTTTATTAGGTTTCACTG 301
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGCTGGTTCGAGTCTCCGTAGGTTTATCAGCGATTTCAATAGCTTTATTAGGTTTCACTG 504
Query 302 CGATAAAGTGGTTCCGGAGAGCTTTGCCTCCGTCGGAGGAGTCGGATTGTCGAGCGATGA 361
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 505 CGATAAAGTGGTTCCGGAGAGCTTTGCCTCCGTCGGAGGAGTCGGATTATCGAGTGATGA 564
Query 362 GAATGGGATTAGAGAAGATGGGACTGGTGGGGTTTTGGGTGAGGAGGGCTTGCCGTTGAA 421
|||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 565 GAATGGGATTAGGGAAAATGGGACTGGTGGGGTTTTGGGTGAGGAGGGATTGCCGTTGAA 624
Query 422 TGGCGTCGAAGCTGATCGGCCGAAGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGG 481
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TGGTGTTGAAGCTGATCGGCCGAAGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGG 684
Query 482 CCACAGGGCTTCTGCGGAAGCCATTAAAGCTGCTTTTAACCAGGAGTTTGGAGATGAGTA 541
||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 685 TCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTA 744
Query 542 CCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCC 804
Query 602 CAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTAC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 CAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTAC 864
Query 662 ATCTCCACGCATTATTCATCAATCTAATTTTGCTGCAACTTCGACTTTTATTGCCAGGGA 721
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 865 ATCTCCACGCATTGTTCATCAATCTAATTTTGCTGCAACTTCCACTTTTATTGCCAGGGA 924
Query 722 AATCGCCCAAGGGTTAATGAAATATCAACCAGACATCATAATCAGTGTTCATCCGTTGAT 781
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 925 AATCGCCCAAGGGTTAATGAAATATCAACCAGATATCATAATCAGTGTTCATCCGTTGAT 984
Query 782 GCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCAC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 GCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCAC 1044
Query 842 CACGGTTATTACAGACTTGAGCACTTGCCATCCCACATGGTTTCATAAGCTTGTGACAAG 901
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1045 CACGGTTATTACAGACTTAAGCACTTGCCATCCTACATGGTTTCATAAGCTTGTGACAAG 1104
Query 902 ATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 ATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATC 1164
Query 962 ACAAATCAAAGTTTATGGCCTTCCTGTTCGACCTTCCTTTGTGAAGCCTGTTCGCCCAAA 1021
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1165 ACAAATCAAAGTTTATGGCCTCCCTGTTCGACCTTCCTTTGTGAAACCAGTTCGCCCAAA 1224
Query 1022 GGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 GGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGG 1284
Query 1082 TGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATTCTTTGTA 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1285 TGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATGCTTTGTA 1344
Query 1142 TGATGAGAGTCTTGGTGAAGCAGTAGGTCAGGTTCTTGTAATCTGTGGACGGAACAAGAA 1201
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1345 TGATAAGAATCTTGGTGAAGCAGTAGGTCAGGTTCTTATAATCTGTGGACGGAACAAGAA 1404
Query 1202 ACTCCAAAGCAAATTAAGCTCCTTAGATTGGAAAATCCCAGTCCAGGTTAAGGGGTTTAT 1261
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1405 ACTCCAAAGCAAATTAAGTTCCTTAGACTGGAAAATCCCTGTCCAGGTTAAGGGGTTTAT 1464
Query 1262 AACGAAGATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGG 1321
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 AACGAAAATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGG 1524
Query 1322 GACTATAGCTGAAGCTATGATAAGAGGGCTACCGATAATCTTAAACGGTTACATTGCTGG 1381
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1525 CACTATAGCTGAAGCTATGATAAGAGGGTTACCGATAATCTTAAACGGTTACATCGCTGG 1584
Query 1382 TCAAGAGGCAGGGAATGTACCGTACGTGGTGGAGAACGGATGTGGGAAATTCTCAAAATC 1441
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1585 TCAAGAGGCAGGGAATGTACCGTACGTGGTGGAAAACGGATGTGGGAAATTCTCAAAATC 1644
Query 1442 ACCAAAAGAGATATCGAAAATTGCAGCGGATTGGTTTGGACCGGCATCGAAAGAGCTGGA 1501
||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1645 ACCGAAAGAGATATCGAAGATTGTAGCGGATTGGTTTGGACCGGCATCGAAAGAGTTGGA 1704
Query 1502 GATAATGTCACAGAATGCATTGAGACTGGCTAGACCAGAAGCGGTGTTCAAGATAGTGCA 1561
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 1705 GATAATGTCACAGAATGCATTGAGGCTGGCTAAACCAGAAGCAGTGTTCAAGATAGTGCA 1764
Query 1562 TGATATGCACGAGCTTGTCCGTCaaaaaaaTTGTCTTCCTCAACTCTCTTGCACTGCCTA 1621
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1765 TGATATGCACGAGCTTGTCCGTAAAAAAAATAGTCTTCCTCAACTCTCTTGCACTGCCTA 1824
Query 1622 ATAAT--ATATCT-T-GTAACTCTATT 1644
||||| |||| | | |||||||||||
Sbjct 1825 ATAATCTATATATGTTGTAACTCTATT 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5