BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944802
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31770.1 | Symbols: ATDBR1, DBR1 | debranching enzyme 1 | ch... 2119 0.0
> AT4G31770.1 | Symbols: ATDBR1, DBR1 | debranching enzyme 1 |
chr4:15370066-15372596 REVERSE LENGTH=1661
Length=1661
Score = 2119 bits (1147), Expect = 0.0
Identities = 1249/1299 (96%), Gaps = 3/1299 (0%)
Strand=Plus/Plus
Query 2 AATAGTAGAATT---CAGAGAGATGAAGATTGCTATTGAAGGTTGTATGCATGGAGACCT 58
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 153 AATAGTAGAATTCAGCAGAGAGATGAAGATTGCAATTGAAGGTTGTATGCATGGAGACCT 212
Query 59 AGACAATGTGTATAAAACAATTCAACATCACGAACAGATTCACAACACTAAAGTCGATCT 118
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 213 AGACAATGTGTATAAAACAATTCAACATTACGAACAGATTCACAACACTAAAGTCGATCT 272
Query 119 CCTCCTCTGCTGCGGCGATTTTCAGGCTGTTAGAAATGAGAAAGACATGGATAGCCTCAA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 273 CCTCCTCTGCTGCGGCGATTTTCAGGCTGTTAGAAATGAGAAAGACATGGATAGCCTTAA 332
Query 179 CGTACCTAGAAAATACAGAGAGATGAAATCTTTCTGGAAATACTACTCCGGCCAAGAAGT 238
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 333 CGTACCTAGAAAATACAGAGAGATGAAATCTTTCTGGAAGTACTACTCCGGCCAAGAAGT 392
Query 239 TGCTCCGATTCCCACAATTTTCATTGGTGGGAATCACGAGGCTTCTAACTACTTGTGGGA 298
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 393 TGCTCCGATTCCCACAATTTTCATTGGTGGGAATCATGAGGCTTCTAACTACTTATGGGA 452
Query 299 ATTGTATTATGGGGGTTGGGCTGCCACCAATATTTACTTTTTGGGTTTTGCTGGAGTTGT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATTGTATTATGGGGGTTGGGCTGCCACCAATATTTACTTTTTGGGTTTTGCTGGAGTTGT 512
Query 359 CAAGTTTGGTAATGTGCGAATTGGAGGCCTTTCGGGTATCTACAATGAGCGGCATTACCG 418
|||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 513 CAAGTTTGGTAATGTGCGAATTGGTGGCCTTTCTGGTATATACAATGAGCGTCATTACCG 572
Query 419 TTCAGGACACTTTGAGCGGCCTCCATATAATGAGAGCACCATTAGATCGGTCTATCATGT 478
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 573 TTCAGGACACTTTGAGCGGCCACCATATAACGAGAGCACCATCAGATCGGTCTATCATGT 632
Query 479 CCGTGAGTATGATGTCCAGAAGTTGTTACAACTGGAAGAGCCGCTTGATATATTTCTCTC 538
||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||| ||
Sbjct 633 TCGTGACTATGATGTCCAGAAGTTGATGCAACTTGAAGAGCCGCTTGATATATTTCTATC 692
Query 539 ACATGATTGGCCTGTTGGTATCACTGATTATGGAGACTCAGAAGCACTTATGCGGCAAAA 598
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 693 ACATGATTGGCCTGTTGGAATCACTGATTATGGAGACTCAGAATCACTTATGCGGCAAAA 752
Query 599 ACCATACTTTCGTCAAGAGATCGAGGAAAAAACTCTTGGAAGTAAACCAGCGGCTCTACT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ACCATACTTTCGTCAAGAGATCGAGGAAAAAACTCTTGGAAGTAAACCAGCGGCTCTACT 812
Query 659 GCTAGAAAAACTGAAGCCTCGGTATTGGTTTTCTGCTCACTTACATTGCAAATTTGCTGC 718
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 813 GCTAGAAAAACTGAAGCCTCAATATTGGTTTTCAGCTCATTTACATTGCAAATTTGCTGC 872
Query 719 TGCTGTTCAACATGGGAATGATGGATCAGTGACAAAGTTTCTTGCCCTTGATAAATGCCT 778
|||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 873 TGCTGTTCAACACGGGAATGATGGGTCAGTGACAAAATTTCTTGCCCTCGATAAATGCCT 932
Query 779 TCCAGGGAAAAAGTTTTTACAGATTATTGAAATCGAATCAGAGCCTGGACCCTTTGAGGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TCCAGGGAAAAAGTTTTTACAGATTATTGAAATCGAATCAGAGCCTGGACCCTTTGAGGT 992
Query 839 CCAATACGATGAAGAGTGGCTAGCAATAACACGAAAGTTCAATTCTATTTTCCCGCTAAC 898
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 993 CCTATACGATGAAGAGTGGCTAGCAATCACACGAAAGTTCAATTCTATTTTCCCGCTAAC 1052
Query 899 AAGGAGATACACAAACTTCAGCACTGCTGGAACTATACAAGAGAGCCGTGAGTGGGTGAG 958
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 AAGGAGATACACAAACGTCAGCACTGCTGGAACTATACAAGAGAGCCGTGAGTGGGTGAG 1112
Query 959 GAAGAAGCTAGAAGAAAGGCAATTTAAACCTTTTGAGTTTGCGAGGACAGTACCTGCATA 1018
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1113 GAAGAAGCTAGAAGAAAGGCAATTTAAACCTTTTGAGTTTGCGAGAACAGTACCTGCATA 1172
Query 1019 TAACCCATCACAACGTATATTTGATTCCATTCCTGAGATCCCACAAAATCCCCAGACGCT 1078
|||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1173 TAACCCATCACAACGTGTATTTGATTCCATTCCTGAGATCCCGCAGAATCCCCAGACGCT 1232
Query 1079 GTCTTTGTTAGAGCTCCTTGGTCTCCCATATCTCCTTGATTCATCACCAGTAACAGGGGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GTCTTTGTTAGAGCTCCTTGGTCTCCCATATCTCCTTGATTCATCACCAGTAACAGGGGA 1292
Query 1139 AAGAACCGAGATCCCTGCTTCACCGGCTCCATCAGATATTCCGACATATGATAGCGAAGA 1198
||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1293 AAGAACCGATATCCCTGCTTCACTGGCTCCATCAGATCTTCCGACATATGATAGCGAAGA 1352
Query 1199 AATCCTAATTGATGACATTGATGAAATAGAAGAGATAGAAGAGGCAAAAGCGGATGACCC 1258
||||| |||||||||||||||||||||||||||||| || || |||||||| ||||| |
Sbjct 1353 AATCCCAATTGATGACATTGATGAAATAGAAGAGATGGAGGAAGCAAAAGCAGATGATCA 1412
Query 1259 TACAAGAGACGAGGCATGAATATCTCCATTCCAGTGGTC 1297
|||||||||||| ||||||||||||||||||||||||||
Sbjct 1413 TACAAGAGACGATGCATGAATATCTCCATTCCAGTGGTC 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5