BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944805
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17980.1 | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins ... 1249 0.0
AT4G31740.1 | Symbols: | Sec1/munc18-like (SM) proteins superf... 651 0.0
> AT2G17980.1 | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins
superfamily | chr2:7824166-7826597 FORWARD LENGTH=2263
Length=2263
Score = 1249 bits (676), Expect = 0.0
Identities = 1476/1852 (80%), Gaps = 95/1852 (5%)
Strand=Plus/Plus
Query 19 TTCCATGGCTCTCAATCTCCG-CAACAAACAGA-TGGAATGTATAATCCGGATGCTGAAC 76
||||||||||||||||||||| | | ||||||| | |||||| ||||||||||| ||||
Sbjct 183 TTCCATGGCTCTCAATCTCCGTC-AGAAACAGACT-GAATGTGTAATCCGGATGTTGAAT 240
Query 77 CTGAATCAACCATTGAATCC-A----AA---CG-A-G--GAATG-TTACAAGGCCTTGAT 123
||||| ||||| |||||||| | || || | | ||| | ||||||| ||||||
Sbjct 241 CTGAACCAACCTTTGAATCCAAGTGGAACTGCGAACGAAGAA-GTTTACAAGATCTTGAT 299
Query 124 CTACGA-CGATTTCTGTGAGAAGATTATCGCTCC-TCTGATGCAAGTGAAGGATCTTCGT 181
||||| | ||| ||| |||| ||| | |||| | ||| || || |||||||| |||
Sbjct 300 TTACGATAGGTTT-TGTCAGAACATTCTATCTCCAT-TGACCCATGTCAAGGATCTGCGT 357
Query 182 AAACAAGGAGTTACACTTC-CCTTGTC-CATCA-ACAAAAAGAGAGAAGCTGTTCGTGAT 238
|| || |||||||||| || ||| || ||| | ||||| | || || |||||| ||||
Sbjct 358 AAGCATGGAGTTACAC-TCTTCTT-TCTCAT-AGACAAAGATCGACAACCTGTTCATGAT 414
Query 239 GCTGCAGCTGTCTACTTTCTTCAACCCACTGAATCCAACATCCAGAGAATCATTGCAGAT 298
| | | |||||||||||| ||||||| |||||||||||| ||||||| ||||| || |||
Sbjct 415 GTTCCCGCTGTCTACTTTGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGAT 474
Query 299 GCTTCTAGATCTCTTTACCATTCCTATCATCTGAATTTCTCGT-ATCGTATCCCTCGCCC 357
|||||||||||||| ||| || ||| ||||||||||||||||| ||| ||||||||
Sbjct 475 GCTTCTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCG-ATCCCTCGTAA 533
Query 358 GCTCCTAGAA-ACTCTCGCTTCTGCGACTCTGAATTCCGGTTCCACTGAG--AGACTTGC 414
| | || ||| | || ||||||| |||||| || || ||||| |||| || || |
Sbjct 534 GTTTCTTGAAGA-GCTAGCTTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCG- 591
Query 415 AACGGTGCATGATCAGTATCTCGAGTTTGTTACTTTGGAAGATAACATGTTTTCTTTGGC 474
|| ||||||||||||||||| |||||||| ||||||||||||||| |||| || ||||
Sbjct 592 AA-AGTGCATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCGCTGGC 650
Query 475 TCAGGAATCTATCTATCTTCAGTTGAATGATCCATCAGCAGGAGATAGAGAGATCGAGGA 534
|||| |||||| |||| |||| ||||||| ||||||||||| || | |||||| | ||
Sbjct 651 TCAGCAATCTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGATTAATGA 710
Query 535 GATTATCGAAAAGGTCGCTAATGGGCTGTTCTGTGTATTGGCAACGCTTGGTGTGGTGCC 594
||||||||||| |||||||| ||| |||| ||||| |||| ||||||||||||||| ||
Sbjct 711 GATTATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCC 770
Query 595 TGTAATCCGATGTCCTCGTGGTGGACCAGCGGAGATGGTTGCATCTTCGTTGGATCAGAA 654
||| |||||||| ||| |||||||||| || |||||||| || |||| ||||||||||||
Sbjct 771 TGTTATCCGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAA 830
Query 655 ACTGAGGGATCATCTTCTGTCTAAGATCAATCTGTTTACCGAAGGTGGAGGCGGTTTCAT 714
|||||||||||||||| |||| |||| |||||||||||| |||||| |||||||||||
Sbjct 831 ACTGAGGGATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGT---GGCGGTTTCAT 887
Query 715 TAGTTCGTTTCAGCGGCCTTTGTTGTGTAT-TTTCGATAGAAACTTTGAACTCTCGGTTG 773
|| ||||||||||| || | ||||| || ||| ||||| |||||||| ||||||||||
Sbjct 888 GAGCTCGTTTCAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTG 946
Query 774 GGATTCAGCATGATTTCAGATACAGGCCTCTTGTTCATGATGTTTT-GGGTCTAAAGCTC 832
||||||||||||||||||||||| ||||||| ||||| |||||| | |||| ||||||||
Sbjct 947 GGATTCAGCATGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGT-TAAAGCTC 1005
Query 833 AAC-AGTTTGAAATTGCCTGGCCAAAAAG-ATGATAAGAAAACATTTG---TAGACAGTT 887
||| | || |||| ||| || | |||| | | |||| | |||| | |||||||
Sbjct 1006 AACCAATT-GAAAGTGCAGGGAGAGAAAGGACCACC-GAAATCGTTTGAGCTGGACAGTT 1063
Query 888 CAGACCCGTTCTGGTCAGCAAATGGTTCTTTAGAGTTTCCTGAAGTCGCTGTAGAAATCG 947
| ||||| |||||||||||||| || || | |||||||| || |||||||| || ||||
Sbjct 1064 CGGACCCATTCTGGTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATCG 1123
Query 948 AAACTCAGTTGAATAAGTACAAAAAAGACGTGGAAGAGGTTAACAGGAGAACTGGAGGTG 1007
|||| |||||||| |||||||| | |||||| ||||||||||||| || ||| |||||||
Sbjct 1124 AAACACAGTTGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGTG 1183
Query 1008 GGAACGGGAGTGCAGAGTTTGATGGGGCTGATCTGATTGGGAACA-CCA-A--G--CATC 1061
||| ||| | | |||||||||||| | ||||||||||| |||| ||| | | ||||
Sbjct 1184 GGAGCGGC-G--CTGAGTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCATC 1240
Query 1062 TGATGAATGCTGTGAACTCACTTCCGGAGTTGACAGAGAGAAAGAAGGTGATTGACAAGC 1121
| ||||| ||||||| || || |||||||| || ||| ||||||| ||||||||||| |
Sbjct 1241 TCATGAACACTGTGAAATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAAC 1300
Query 1122 ACACCAACATTGCGACTGCGCTGCT-AGGAGAGATCAAGGAGCGATCTCTGGATGCATAC 1180
||||||| || || || ||||| || |||| ||||||||||| ||||| | || || | |
Sbjct 1301 ACACCAATATCGCAACAGCGCT-CTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTC 1359
Query 1181 ACTAAGAAAGAGAAT-GAGATGATGGTGAGAGGCAGCATAGACAGGAGC-GAGCTTCTAT 1238
||||||||||| || || |||||| |||| ||| | || ||||| | | || ||| |
Sbjct 1360 ACTAAGAAAGA-AAGCGACATGATGATGAGGGGCGGAATCGACAGAA-CTGAACTTATGG 1417
Query 1239 CTGTTTTGAAAGGGAA-GGGTACCAAA-ATGGACAAGTTACGATTTGCCATCATGTACCT 1296
||| | ||||||| || ||| || ||| ||||||||| | || ||||| |||||||||||
Sbjct 1418 CTGCTCTGAAAGGCAAAGGG-AC-AAAGATGGACAAGCTCCGGTTTGCAATCATGTACCT 1475
Query 1297 AATCTCCTTGGAAACCATCAACCAGGCTGAAGTTGAAGCCGTGGAAGCGGCATTGCGTGA 1356
|||||| |||||||| ||||| | ||||||||||| ||||| || |||||| |||
Sbjct 1476 GATCTCCACAGAAACCATAAACCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATGA 1535
Query 1357 AGCTGAGGCCGATACAAGAGCGTTTCAGTATGTGAA-AAAGATCAAGTCGCTGAATGTGT 1415
||||||||| |||||||| |||||||||||||| || ||| ||||| ||| | || | |
Sbjct 1536 AGCTGAGGCTGATACAAGTGCGTTTCAGTATGTAAAGAAA-ATCAAATCGTTAAACGCAT 1594
Query 1416 CTTTGGCAGC--C-TCAGC-AA----GC-AG-A-A-GCAACATTGTTGACTGGGCTGAGA 1463
|||| ||||| | ||||| || || || | | |||||||||| |||||||| ||||
Sbjct 1595 CTTTTGCAGCTACATCAGCGAATTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAGA 1654
Query 1464 AGCTTTATGGTCAGTCTATAAGCGCGGTCACTGCAGGGGTCAAGAATCTCTTATCAAGTG 1523
||||||| || |||||||||||||| || |||||||| ||||||||||| ||||| ||||
Sbjct 1655 AGCTTTACGGACAGTCTATAAGCGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGTG 1714
Query 1524 ATCAGCAACTGGCGGTGGCGCGGACAGTTGAAGCCTTAACTGAGGGAAAACCAAACCCAG 1583
|||| ||| |||| ||| | || ||||| ||||| ||||| || |||||||||||||| |
Sbjct 1715 ATCAACAATTGGCAGTGACTCGAACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCGG 1774
Query 1584 AAACCGATTCATACCTCATGCTGGATCCGAGAGCTTCAAAGTCAGGATCTAG-T--GGTA 1640
| | |||||| |||| | | ||||| || |||||| ||||||| | ||||| | |||
Sbjct 1775 AGATCGATTCTTACCGCTTCCTGGACCCAAGAGCTCCAAAGTC-G--TCTAGCTCCGGTG 1831
Query 1641 ATAGTTATGTGAAGGGGCCTTTCAAAGAAGCCATAGTTTTCATGATTGGTGCAGGTAACT 1700
||| |||| || || || |||| |||||| ||||| |||||||| |||| ||||||||
Sbjct 1832 GTAGCCATGTAAAAGGACCGTTCAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAACT 1891
Query 1701 ACATCGAATATAGCAGTTTGCAGGAGCTCTCGCAGCGACAAGAGATG-GTTAAGAACATT 1759
| | || ||| | |||||||||||| | | ||| |||| | | ||||| ||| ||
Sbjct 1892 ATGTTGAGTATGGAAGTTTGCAGGAGTTGACTCAGAGACA-GTTAACCGTTAAAAACGTT 1950
Query 1760 ATATATGGAGCCACAGAGATCCTTA-CTGGAACTGAGCTTGTTG-AGCAGCT 1809
|| ||||||||||| ||||| |||| | ||| |||| ||| || |||||||
Sbjct 1951 ATTTATGGAGCCACTGAGATTCTTAAC-GGAGGTGAG-TTGGTGGAGCAGCT 2000
> AT4G31740.1 | Symbols: | Sec1/munc18-like (SM) proteins superfamily
| chr4:15363778-15364349 FORWARD LENGTH=516
Length=516
Score = 651 bits (352), Expect = 0.0
Identities = 400/424 (94%), Gaps = 0/424 (0%)
Strand=Plus/Plus
Query 1420 GGCAGCCTCAGCAAGCAGAAGCAACATTGTTGACTGGGCTGAGAAGCTTTATGGTCAGTC 1479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 GGCAGACTCAGCAAGCAGAAGCAACATTGTTGACTGGGCTGAGAAGCTTTATGGTCAGTC 152
Query 1480 TATAAGCGCGGTCACTGCAGGGGTCAAGAATCTCTTATCAAGTGATCAGCAACTGGCGGT 1539
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 153 TATAAGCGCGGTCACTCCAGGAGTCAAGAATCTCTTATCAAGTGATCAGCAACTGCCGGT 212
Query 1540 GGCGCGGACAGTTGAAGCCTTAACTGAGGGAAAACCAAACCCAGAAACCGATTCATACCT 1599
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 213 GGCACGGACAGTTGAAGCCTTAACTGACGGAAAACCAAACCCAGAAACCGATTCATACCT 272
Query 1600 CATGCTGGATCCGAGAGCTTCAAAGTCAGGATCTAGTGGTAATAGTTATGTGAAGGGGCC 1659
||| |||||| |||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 273 CATACTGGATGCGAGAGCTTCAAAGTCAGGATCTATTGATAATAGCTATGTGAAGGGGCC 332
Query 1660 TTTCAAAGAAGCCATAGTTTTCATGATTGGTGCAGGTAACTACATCGAATATAGCAGTTT 1719
|||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 333 TTTCGAAGAAGCCATAGTCTTCATGATTGGTGGAGGTAACTACATTGAATATAGCAGTTT 392
Query 1720 GCAGGAGCTCTCGCAGCGACAAGAGATGGTTAAGAACATTATATATGGAGCCACAGAGAT 1779
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 393 GCAGGAGCTCTCGCAGCGACAGGAGATGGTTAATAACATTATATATGGAGCCACAGAGAT 452
Query 1780 CCTTACTGGAACTGAGCTTGTTGAGCAGCTCGCTGTGTTGGGTCAAAAAATGGGACTGAA 1839
|||||||||||||||||| ||||||||||||| | ||||||||| || ||||||||||
Sbjct 453 CCTTACTGGAACTGAGCTCGTTGAGCAGCTCGGGGAGTTGGGTCAGAAGATGGGACTGAG 512
Query 1840 ATAG 1843
||||
Sbjct 513 ATAG 516
Score = 135 bits (73), Expect = 1e-30
Identities = 83/88 (94%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1265 ATGGACAAGTTACGATTTGCCATCATGTACCTAATCTCCTTGGAAACCATCAACCAGGCT 1324
|||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||
Sbjct 1 ATGGACAAGTTACGATTTGCCATCATGTACCTTCTCTCGTTGGAAACTATCAACCAGTCT 60
Query 1325 GAAGTTGAAGCCGTGGAAGCGGCATTGC 1352
||||||||||||||||||||||||||||
Sbjct 61 GAAGTTGAAGCCGTGGAAGCGGCATTGC 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92268601710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5