BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944806
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24765.1 | Symbols: ARF3, ARL1, ATARL1 | ADP-ribosylation fa... 767 0.0
> AT2G24765.1 | Symbols: ARF3, ARL1, ATARL1 | ADP-ribosylation
factor 3 | chr2:10562726-10565198 FORWARD LENGTH=882
Length=882
Score = 767 bits (415), Expect = 0.0
Identities = 522/574 (91%), Gaps = 5/574 (1%)
Strand=Plus/Plus
Query 15 AAGAAGATGGGAATCGTGTTCACGAAGTTGTTCTCTTCCTTGTTTGGGAACAAAGAAGCT 74
||||||||||||||| | |||||| | ||||||||||| | ||||| ||||||||||||
Sbjct 91 AAGAAGATGGGAATCTTATTCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCT 150
Query 75 CGTATCCTCGTCCTCGGCCTCGACAATGCCGGAAAAACCACAATCCTCTATCGGCTTCAA 134
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 151 CGAATCCTCGTCCTCGGTCTCGACAATGCTGGAAAAACCACAATCCTCTATCGGCTTCAG 210
Query 135 ATGGGAGAGGTAGTCTCCACGATTCCGACTATTGGATTTAACGTCGAGACAGTGCAGTAC 194
||||| || || ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 211 ATGGGGGAAGTTGTCTCTACGATTCCGACTATTGGATTTAACGTTGAGACTGTGCAGTAC 270
Query 195 AACAATATCAAGTTTCAGGTCTGGGATTTAGGTGGACAAACGAGCATTAGGCCATATTGG 254
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 271 AACAATATCAAGTTTCAGGTCTGGGATTTAGGTGGACAAACAAGCATCAGGCCATACTGG 330
Query 255 AGATGCTATTTCCCAAATACACAAGCAGTGATCTATGTTGTTGATTCGAGTGATACAGAT 314
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 331 CGATGCTATTTCCCGAATACACAAGCAGTGATCTATGTTGTTGACTCGAGTGATACAGAT 390
Query 315 AGAATTGGAGTGGCGAAAGAAGAGTTCCATGCAATTTTGGAGGAAGAGGAATTGAAAGGT 374
||||| || ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||
Sbjct 391 AGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGGAAGATGAATTGAAAGGT 450
Query 375 GCAATGGTTCTAATATTTGCAAACAAGCAGGATCTACCAGGTGCACTCGACGACGCAGCT 434
|| ||||||| ||||||||||||||||||||||| || ||||||||||| || || |||
Sbjct 451 GCGGTGGTTCTGATATTTGCAAACAAGCAGGATCTTCCCGGTGCACTCGATGATGCGGCT 510
Query 435 GTGACAGAGGCCTTGGAGTTGCACAAGATAAAGAGCCGTCAATGGGCAATCTTCAAAACT 494
|| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 511 GTTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACT 570
Query 495 TGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGCTTAGACTGGTTGAGTAATACCTTGAAA 554
|||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 571 TGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGGTTGAGTAATACATTGAAG 630
Query 555 TCAGGGA-GTGGCTAACATCATC-TC-T-CACCA 584
|| |||| |||||||| |||||| || | |||||
Sbjct 631 TC-GGGAAGTGGCTAAAATCATCGTCATACACCA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5