BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944807

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31730.1 | Symbols: GDU1 | glutamine dumper 1 | chr4:1536109...   778    0.0  


> AT4G31730.1 | Symbols: GDU1 | glutamine dumper 1 | chr4:15361091-15361850 
FORWARD LENGTH=760
Length=760

 Score =  778 bits (421),  Expect = 0.0
 Identities = 477/504 (95%), Gaps = 4/504 (1%)
 Strand=Plus/Plus

Query  5    CACAACAACAACAAAAATGAGACCGTTGAGCGTACAGTCGAAGTTTGAAGATGTGGCGAC  64
            |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct  101  CACAACAACAACAAAAATGAGACCATTGAGCGTACAATCGAAGTTTGAAGATGTGGCAAC  160

Query  65   ATCAACCTCGGTGAATCACCACGGAGTGACGCCGCAATCACCGTGGCACTCGCCGGTTCC  124
             |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  161  GTCAACCTCCGTTAATCACCACGGAGTGACGCCGCAATCACCGTGGCACTCGCCGGTTCC  220

Query  125  TTACCTCTTCGGCGGTTTAGCGGCGATGCTAGGACTAATCGCCTTTTCTCTTCTCATCCT  184
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  221  TTACCTCTTCGGCGGTTTAGCGGCGATGCTAGGACTAATCGCCTTTGCTCTTCTCATCCT  280

Query  185  TGCCTGCTCTTACTGGCGCCTGTCTTCCTCCGGTGAAGAAGATGGTCAGAACGTTGATGA  244
             || ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct  281  CGCTTGCTCTTACTGGCGCCTGTCTTCCTCCGGCGAAGAAGATGGTCAAAACGTAGATGA  340

Query  245  AGAGAAAGAGAGTCGGTCTGGAGATAAGGCGGCGAATGGAGCTTACGAGGAGAAGTTTCT  304
            |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  341  AGAGAAAGAGAGCCGGTCTGGAGATAAGGCGGCGAACGGAGCTTACGAGGAGAAGTTTCT  400

Query  305  TGTCATAATGGCCGGGGAAGACTTGCCGAGGTATCTCGCGACACCGGCGATGAAAAAGTG  364
            ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  401  TGTCATAATGGCCGGAGAAGATTTGCCGAGGTATCTGGCGACACCGGCGATGAAAAAGTG  460

Query  365  TACGTGTGGTGGTCACGAGGGTAAAATGGTGATTTCTCAGGAGGAAAGTGTTGCCAAAGA  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  461  TACGTGTGGTGGTCACGAGGGTAAAATGGTGATTTCTCAGGAGGAAAGTGTTGCCAAAGA  520

Query  425  GGAAGGGAAGATGAGAGAAGGTGAAGA-GA-AA-GTGAAAGATACCGACGAAACAACAAC  481
            ||||| ||||||||||||||| ||||| || || ||||||||||||| ||| ||||| ||
Sbjct  521  GGAAGAGAAGATGAGAGAAGGCGAAGAAGAGAAAGTGAAAGATACCGGCGAGACAACTAC  580

Query  482  TACAAGTCACTAAACCttt-tttt  504
            ||||||||||||||| ||| ||||
Sbjct  581  TACAAGTCACTAAACTTTTCTTTT  604



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24564497883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5