BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944809

Length=1230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31660.1 | Symbols:  | AP2/B3-like transcriptional factor fa...  91.6    2e-17


> AT4G31660.1 | Symbols:  | AP2/B3-like transcriptional factor 
family protein | chr4:15334013-15335630 FORWARD LENGTH=1173
Length=1173

 Score = 91.6 bits (49),  Expect = 2e-17
 Identities = 239/328 (73%), Gaps = 24/328 (7%)
 Strand=Plus/Plus

Query  41   CTTCAGTCTCCGGCCAATC-CACATTTCTTCCAGCCACTTCTTCCCGG-TTCCGAGACTC  98
            ||||| ||||| |  || | |||||||||||||||||||||||||||| ||| ||  || 
Sbjct  22   CTTCAATCTCC-GAAAAACTCACATTTCTTCCAGCCACTTCTTCCCGGCTTC-GACTCTT  79

Query  99   ACCTCTCA-ATACCTGTTACA-TTCTTCTCAAAGCACATTGAAGGGAA-AAACGAGCAGA  155
            |||| | | || ||||| | | || |||||||| | |||  |||| || ||||||  || 
Sbjct  80   ACCT-TAACATTCCTGTGA-AGTTTTTCTCAAAACGCATACAAGG-AAGAAACGA--AGG  134

Query  156  AA--ACGGCG-AGACTTATATCGGACGCTTCTGATAGAATTTGGCAAGTGAAAATGGATG  212
            ||  || | | || || | | | ||||| ||||| | || ||||||||| || ||  | |
Sbjct  135  AAGGACAGTGGAG-CTAAGAACCGACGCGTCTGAAAAAACTTGGCAAGTTAAGATCCAAG  193

Query  213  GCCGGAGACTCACTGAAGGCTGGAAAGAGTTTGCAA-CAGCACATAATCTTCAAA-TCGG  270
            | |||||||| || |  |||||||||||||| || | | || ||| || |||  | | ||
Sbjct  194  GTCGGAGACTAACAGTGGGCTGGAAAGAGTTCGCCAGC-GCGCATGAT-TTCCGAGTTGG  251

Query  271  CGACATCATTATTTTCAAACACCAAGGGGACAT-GTTGTTT-AGTGTGACACCTTTCGGT  328
             || || ||  |||||| |||| ||||   | | | | ||| | ||| ||  | || || 
Sbjct  252  GGATATTATCGTTTTCAGACACGAAGGAT-CTTTGGTATTTCA-TGTCACTGCATTGGGA  309

Query  329  CCTAGTTGCTGTGAAATTCAGTACGTAC  356
            || ||||||||||| ||||| || ||||
Sbjct  310  CCCAGTTGCTGTGAGATTCAATATGTAC  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60441456180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5