BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944813

Length=1939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase ...   449    4e-125
  AT4G31680.1 | Symbols:  | Transcriptional factor B3 family prot...   316    4e-85 


> AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase 
(RECQl4A) | chr1:3647894-3655590 REVERSE LENGTH=3916
Length=3916

 Score =  449 bits (243),  Expect = 4e-125
 Identities = 350/400 (88%), Gaps = 13/400 (3%)
 Strand=Plus/Plus

Query  1543  CAAGTAAACCGGGGGCAACC-CTAGCAAAAGATCCGCTAGCATCAGAGAAGCAAAGTACT  1601
             ||||||||| |||||||||| | |||||||| ||||||| ||||||||||||||||||||
Sbjct  3168  CAAGTAAACAGGGGGCAACCGC-AGCAAAAGGTCCGCTAACATCAGAGAAGCAAAGTACT  3226

Query  1602  CTTCCACTTCCAACTA-AAGATGGTCTTCCAATAGATATTAATCTCTCCT-TCAACATTT  1659
             ||||||||| |||| | |||||| || ||||| |||| | ||||||| ||  |||||| |
Sbjct  3227  CTTCCACTTACAAC-AGAAGATGCTCCTCCAAAAGATGTGAATCTCT-CTGCCAACATGT  3284

Query  1660  ACACAGCCGTGAGGAAGCTTCGTACAGCTCTTGCCAGAGAAGGCCCTGATGGTGTCATGG  1719
             |||||||| |||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct  3285  ACACAGCCTTGAGGAAGCTTCGTACAGCTCTTGTCAAAGAAGCCCCTGATGGTGTCATGG  3344

Query  1720  CATATCAGATATTCATGAATTCAACGCTTCAGCAGATAAGCAGGCAAATTCCGAGAACCA  1779
             ||||||| |||||||| |||||||||||||||||||||||||| |  || || |||||||
Sbjct  3345  CATATCATATATTCATCAATTCAACGCTTCAGCAGATAAGCAGACGGATACCCAGAACCA  3404

Query  1780  AAGAGGAACTCCTCCAAATCAATGGCCTTGTGCAGGCTAAAGTAAGTAAGTACGGTGATC  1839
             |||||||||||||  ||||||||||||||| | |||| |||||||| |||||||||||||
Sbjct  3405  AAGAGGAACTCCTTGAAATCAATGGCCTTGGGAAGGCCAAAGTAAGCAAGTACGGTGATC  3464

Query  1840  GGTTGTTAGAAACAATAGAAACAACGGTGAACGAGTACTACGGAACCAAAAAGAAAGATC  1899
              |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct  3465  AGTTGTTGGAAACAATAGAAACAACGGTGAACGAGTACTATGGAACCAATAAGAAAGA-C  3523

Query  1900  CCATAATCATTCATCAGTAACGGCAGTACCGATTCAGGGA  1939
              |     ||| |||||| ||||  ||| ||||||||||||
Sbjct  3524  TC-----CAT-CATCAGCAACGATAGTCCCGATTCAGGGA  3557


> AT4G31680.1 | Symbols:  | Transcriptional factor B3 family protein 
| chr4:15340289-15342081 REVERSE LENGTH=1390
Length=1390

 Score =  316 bits (171),  Expect = 4e-85
 Identities = 317/385 (82%), Gaps = 19/385 (5%)
 Strand=Plus/Plus

Query  816   GGAGGAAGCCGGTTTGTGAAGTTAACTCCTACACTAAACAGTCTTCACG-TTGGTAAACA  874
             |||| ||| |||||||||||||||||||||||||||||||| ||| | | |||| |||||
Sbjct  734   GGAGAAAGTCGGTTTGTGAAGTTAACTCCTACACTAAACAGCCTTGA-GATTGGCAAACA  792

Query  875   GCATCTACCGGTAAGTTTCACGAGAGAGAACAGACTCATAAATCCGGGGAAGATAGTTCT  934
             ||||||||||||||||||||||| || |||  |||||||| |||||||| ||||| ||||
Sbjct  793   GCATCTACCGGTAAGTTTCACGAAAGGGAATGGACTCATACATCCGGGGGAGATAATTCT  852

Query  935   GGTGGACAAAAACCGAGCTGAATGGTTGATGGAGCTTAAGGTTGACAAAAGTACTGGTTT  994
             |||||||||| || ||| |||||||| |||| ||||| ||||||| || || |  ||   
Sbjct  853   GGTGGACAAAGACAGAGTTGAATGGTCGATGAAGCTTCAGGTTGATAATAG-A--GGAGG  909

Query  995   GATGTATATTATTAG-TGGCAATGGTTGGAAAAAGTT-CTGCGCCGCCAATGAAATAAGC  1052
             |||| |||| ||| | ||| ||||  ||||||| ||| ||| ||||| |||||| || ||
Sbjct  910   GATGCATAT-ATTTGGTGGTAATGACTGGAAAA-GTTTCTGTGCCGCAAATGAAGTAGGC  967

Query  1053  GCAGGGGAGTCTCTAATTTTAGAATTGATCCGAGGAGG-TGTAACTCCTTTGCTT-AAGT  1110
             ||||||||||| |||| ||| || ||||| |||||||| | ||| ||||||  || ||||
Sbjct  968   GCAGGGGAGTCACTAACTTTGGAGTTGATTCGAGGAGGCT-TAAGTCCTTTA-TTCAAGT  1025

Query  1111  TCATCTCCAAGTTGGATCAACCAC-CATTTGAAGCAGAGGCTCAGGC-ACACAAGAGAGC  1168
             || |||||||| | || ||||| | |||| |||||||||| | |||  ||||||||||||
Sbjct  1026  TCTTCTCCAAGATAGAGCAACC-CTCATTCGAAGCAGAGGAT-AGGAGACACAAGAGAGC  1083

Query  1169  TAGAGTCCAAAAATTG-AGCCAGGA  1192
             | ||||||| || | | ||||||||
Sbjct  1084  TCGAGTCCATAA-TGGGAGCCAGGA  1107



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 96033642585


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5