BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944827
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31550.1 | Symbols: WRKY11, ATWRKY11 | WRKY DNA-binding prot... 1310 0.0
AT2G24570.1 | Symbols: WRKY17, ATWRKY17 | WRKY DNA-binding prot... 453 2e-126
AT3G58710.1 | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding prot... 76.8 4e-13
> AT4G31550.1 | Symbols: WRKY11, ATWRKY11 | WRKY DNA-binding protein
11 | chr4:15289947-15291539 REVERSE LENGTH=1177
Length=1177
Score = 1310 bits (709), Expect = 0.0
Identities = 952/1058 (90%), Gaps = 61/1058 (6%)
Strand=Plus/Plus
Query 10 AAGAGATCATCATGGCCGTCGATCTAATGCGTTTTCCTAAGATGGATGATCAAACGGCTA 69
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 71 AAGAAATCATCATGGCCGTCGATCTAATGCGTTTCCCTAAGATAGATGATCAAACGGCTA 130
Query 70 TTCAGGAGGCTGCATCTCAAGGTTTACAGAGTATGGAACATCTGATCCGTGTCCTCTCTA 129
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 131 TTCAGGAAGCTGCATCGCAAGGTTTACAAAGTATGGAACATCTGATCCGTGTCCTCTCTA 190
Query 130 ACCGTCCCGAACAACAACACAACGTTGACTGCTCTGAGATCACTGATTTCACCGTTTCTA 189
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 191 ACCGTCCCGAACAACAACACAACGTTGACTGCTCCGAGATCACTGACTTCACCGTTTCTA 250
Query 190 AATTCAAAACCGTCATTTCTCTCCTTAACCGTACCGGTCACGCTCGCTTCAGACGCGGAC 249
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 251 AATTCAAAACCGTCATTTCTCTCCTTAACCGTACTGGTCACGCTCGGTTCAGACGCGGAC 310
Query 250 CGGTTCACTCCA-TT--TC------ATCTCCGAAACAACAGAGTCAGATCGT-AAAAACG 299
|||||||||||| || || ||||| ||||| ||||||||||||||| |||||
Sbjct 311 CGGTTCACTCCACTTCCTCTGCCGCATCTCAGAAACTACAGAGTCAGATCGTTAAAAAT- 369
Query 300 ATTCAACC-GAAGGCTCCGGTTGTTACTCAGCCGGCGAGAACAACGACGAATCTCCCGCA 358
| |||||| || ||||||| | | || | |||||||| ||||||| ||| ||
Sbjct 370 ACTCAACCTGA-GGCTCCG------A-T-AGT-G---AGAACAACTACGAATCACCCTCA 416
Query 359 AATAGTTCCACCACCGTCGAGCTTTGTTCACTCGAATCAGCCTAGCGTAACACTCGATTT 418
||| ||||| |||||||| | | | | | || | ||||||||||
Sbjct 417 AATCGTTCCTCCACCGTC----T------A---G--T--G--TA----A-CACTCGATTT 452
Query 419 CTCCAAACCAAGCATCTTCGGCACCAAAGCTAAGAGCTCCGACCTGGAATTCTC-AAAGG 477
||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 453 CTCTAAACCAAGCATCTTCGGCACCAAAGCTAAGAGCGCCGAGCTGGAATTCTCCAAAG- 511
Query 478 AAAACTTCAGCGTTTCTTTAAACTCTTCCTTCATGTCGTCGG-GAATTACCGGAGACGGC 536
|||||||||| |||||||||||||| || ||||||||||||| || | ||||||||||||
Sbjct 512 AAAACTTCAGTGTTTCTTTAAACTCCTCATTCATGTCGTCGGCGA-TAACCGGAGACGGC 570
Query 537 AGCGTTTCCAATGGAAAAATCTTTCTCGCGTCTGCTCCGTCGCAGCCTGTGAACTCCTCC 596
||||| ||||||||||||||||| || || |||||||||| ||||||||| ||||| |||
Sbjct 571 AGCGTCTCCAATGGAAAAATCTTCCTTGCTTCTGCTCCGTTGCAGCCTGTTAACTCTTCC 630
Query 597 GGAAAGCCACCGTTGGCCGCTGGTCATCCTTACAGAAAGAGATGCCTCGAGCATGAGCAC 656
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 631 GGAAAACCACCGTTGGC---TGGTCATCCTTACAGAAAGAGATGTCTCGAGCATGAGCAC 687
Query 657 TCCGAGAGTTTCTCCGGCAAAGTCTCCGGCTCCGGCTACGGAAAGTGCCATTGCAAGAAA 716
|| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 688 TCAGAGAGTTTCTCCGGAAAAGTCTCCGGCTCCGCCTACGGAAAGTGCCATTGCAAGAAA 747
Query 717 AGCAGGAAAAATCGGATGAAGAGAACTGTGAGAGTACCGGCGATAAGTGCAAAGATCGCC 776
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 748 AGCAGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGATAAGTGCAAAGATCGCC 807
Query 777 GATATTCCACCGGACGAATATTCTTGGAGGAAGTACGGACAAAAACCGATCAAAGGCTCA 836
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 808 GATATTCCACCGGACGAATATTCGTGGAGGAAGTACGGACAAAAACCGATCAAGGGCTCA 867
Query 837 CCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCCAGCGAGGAAACAC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCCAGCGAGGAAACAC 927
Query 897 GTGGAACGAGCATTAGATGATCCAGCGATGCTTATCGTGACATACGAAGGAGAGCACCGT 956
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 928 GTGGAACGAGCATTAGATGATCCAGCGATGCTTATTGTGACATACGAAGGAGAGCACCGT 987
Query 957 CATAACCAATCCGCGATGCAGGAGAATATTTCTTCTTCAGGCGTTAATGATTTAGTGTTT 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 988 CATAACCAATCCGCGATGCAGGAGAATATTTCTTCTTCAGGCATTAATGATTTAGTGTTT 1047
Query 1017 GCCTCGGCTTAACTTTTTT--GTA--ATT-GTTTTTTG 1049
|||||||||| |||||||| ||| ||| ||||||||
Sbjct 1048 GCCTCGGCTTGACTTTTTTTTGTACTATTTGTTTTTTG 1085
> AT2G24570.1 | Symbols: WRKY17, ATWRKY17 | WRKY DNA-binding protein
17 | chr2:10437398-10439298 REVERSE LENGTH=1320
Length=1320
Score = 453 bits (245), Expect = 2e-126
Identities = 543/682 (80%), Gaps = 40/682 (6%)
Strand=Plus/Plus
Query 365 TCCACCACC-GTCGAGCTTTGTTCACTCGAATCAGCCTAGCGTAACACTCGATTTCTCCA 423
|||| |||| || ||||| ||||| | ||||| | ||||| || | |||||| | |
Sbjct 379 TCCAGCACCGGT-TAGCTTCGTTCAGGCAAATCAACAAAGCGTGACGTTAGATTTCACTA 437
Query 424 AACCAAGCATCTTCGGCACCAAAGCTAAGAGCTCCGA-CCTG--GA-ATT-CTCAAAGGA 478
||| ||| | || ||| | ||| | |||||||| || || || || || ||| ||
Sbjct 438 GACCGAGCGTTTTTGGCGCTAAAACCAAGAGCTCGGAGGTTGTTGAGTTTGCT-AAA-GA 495
Query 479 AAACTTCAGCGTTTCTT-TAAACTCTTCCTTCATGTCGTC-GGGAATTACCGGAGACGGC 536
| ||| ||||| |||| | |||||||| |||||||| || | | || ||||| || ||
Sbjct 496 GAGCTTTAGCGTATCTTCT-AACTCTTCTTTCATGTCTTCTGCG-ATCACCGGTGATGGA 553
Query 537 AGCGTTTCCAATGG---AAAAATCTTTCTCGCGT-CTGCTCC-GTCGCAGCCTGTGAAC- 590
|| || || || || |||||||| || | | ||||| | || ||| ||| ||
Sbjct 554 AGTGTCTCTAAAGGCTCTTCGATCTTTCTTGC-TCCGGCTCCAG-CGGTGCCAGTG-ACT 610
Query 591 TCCTCC-GGAAAGCCACCG-TTGGCCGCTGGTCATCCTTACAGAAAGAGATGCCTCGAGC 648
|||||| ||||| || ||| || |||||| ||||||||| ||||||||| | || |
Sbjct 611 TCCTCCGGGAAA-CCGCCGCTT----TCTGGTCTTCCTTACAGGAAGAGATGCTTTGAAC 665
Query 649 ATGAGCACTCCG-AGAG-TTTCTCCGGCAAAG-TCTCCGGCTCCGGCTACGGAAAGTGCC 705
|||| ||||| | || | ||| |||||| ||| |||| ||||||||| |||| |||||||
Sbjct 666 ATGACCACTCTGAAG-GCTTT-TCCGGC-AAGATCTCTGGCTCCGGCAACGGCAAGTGCC 722
Query 706 ATTGCAAGAAAAGCAGGAAAAATCGGATGAAGAGAACTGTGAGAGTACCGGCGATAAGTG 765
|||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 723 ATTGCAAGAAAAGCCGAAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGGTAAGTG 782
Query 766 CAAAGATCGCCGATATTCCACCGGACGAATATTCTTGGAGGAAGTACGGACAAAAACCGA 825
|||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||
Sbjct 783 CAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGAAAGTATGGACAAAAACCGA 842
Query 826 TCAAAGGCTCACCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCCAG 885
|||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||
Sbjct 843 TCAAAGGCTCACCACATCCACGGGGTTATTACAAGTGTAGTACATTTAGAGGATGTCCAG 902
Query 886 CGAGGAAACACGTGGAACGAGCATTAGATGATCCAGCGATGCTT-ATCGTGACATACGAA 944
||||||||||||||||| |||| || |||||| || ||||| || || ||||| ||||||
Sbjct 903 CGAGGAAACACGTGGAAAGAGCTTTGGATGATTCAACGATG-TTGATTGTGACGTACGAA 961
Query 945 GGAGAGCACCGTCATAACCAATCCGCGATGCAGGAGAATATTTCTTCTTCAGGCGTTAAT 1004
||||||||||||||| |||| ||| ||||||||||| || | || || || ||| | |
Sbjct 962 GGAGAGCACCGTCATCACCAGTCCACGATGCAGGAGCATGTAACTCCT--AG-CGTGAGT 1018
Query 1005 GATTTAGTGTTTGCCTCGGCTT 1026
| ||| ||||||| |||||||
Sbjct 1019 GGTTTGGTGTTTGGTTCGGCTT 1040
> AT3G58710.1 | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding protein
69 | chr3:21715007-21716916 FORWARD LENGTH=1154
Length=1154
Score = 76.8 bits (41), Expect = 4e-13
Identities = 85/105 (81%), Gaps = 8/105 (8%)
Strand=Plus/Plus
Query 801 TGGAGGAAGTACGGACAAAAACCGATCAAAGGCTCACCACA-CCCACGTGGTTACTACA- 858
||||| ||||||||||||||||||||||||||||| || | |||| | || || ||||
Sbjct 411 TGGAGAAAGTACGGACAAAAACCGATCAAAGGCTCGCCTTATCCCAGG-GGATATTACAG 469
Query 859 AGTGCAGTA-CATTCAGA-GGATGTCCAGCGAGGAAACACGTGGA 901
| || |||| | | || | |||||||| |||||||| || |||||
Sbjct 470 A-TGTAGTAGC-T-CAAAAGGATGTCCGGCGAGGAAGCAGGTGGA 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51439766528
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5