BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944838
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31450.1 | Symbols: | RING/U-box superfamily protein | chr4... 2281 0.0
> AT4G31450.1 | Symbols: | RING/U-box superfamily protein | chr4:15255623-15258812
REVERSE LENGTH=1940
Length=1940
Score = 2281 bits (1235), Expect = 0.0
Identities = 1451/1553 (93%), Gaps = 24/1553 (2%)
Strand=Plus/Plus
Query 1 TTGCATCCATTTAAAAAGTTCATGGATAGGTGGTCGGGTAAAAGAGCCCAT-GAGGCGCG 59
||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
Sbjct 94 TTGCATCCATTTAAAAAGTTCATGGATAGGTGGTCCAGTAAAAGAG-CCATGGAGGCGAG 152
Query 60 ACCTGACTCTAAGAAGGCTGGTGGTGTTGTTTTCAGAGATAGATTTAACAACAATAGTTG 119
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 153 ACCTGACTCTAAGAAGAAGGGTGGTGTTGTTTTTAGAGATAGATTTAACAGCAATAGTTG 212
Query 120 CAAGGTTCCTATTTGTAGTGATGAGaaaaaaaCGATGAACTTTACTCGGTTTGTTGGCTC 179
||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 213 CAAGGTTCCTATTTGTAGTGATGAGAAAAAATCAATGAACTTTACTAGGTTTGTTGGCTC 272
Query 180 TTCAGATAAGAAAGAGAAGTCAGTCTTGTCTACATACCGCTCTTCGCCAAACGGGAAGGA 239
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 273 TTCAGATAAGAAAGAGAAATCAGTGTTGTCTACATACCGCTCTTCGCCAAACGGGAAGGA 332
Query 240 AGTAATTGGAACTTCCTCGAAGATTTGTGGCTCTAGCTCCTCTTCTGTGAAAAGTG---A 296
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
Sbjct 333 AGTAATTGGAACTTCCTCTAAGATTTGTATCTCTAGCTCCTCTTCTGTGAAAAGTGGTGA 392
Query 297 GAAGCAACCGTTTTCTCAGATTGCCATGGATTCATCAGAGAGCAGCAGAGGTAGCGAAGA 356
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 393 GAAGCAACCGTTTTCTCAGATAGCCATTGATTCATCAGAGAGCAGCAGAGGTAGTGAAGA 452
Query 357 TGAGGTAGAGACAGAAATCTTGCAAGTTTCTCTTGGAAGAGATAAAAGAA-AA-GCTAAC 414
||||||||| ||||||||||||||||| ||||||||||||||||||||| || | |||
Sbjct 453 CGAGGTAGAGTCAGAAATCTTGCAAGTTCCTCTTGGAAGAGATAAAAGAAGAATG--AAC 510
Query 415 AATAAACTTATTTATGGAAAAGTTATAACACCAGAAGCGGAATGCTCAAACTTGCCATCG 474
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 511 AATAAACTTATTTATGGAAAAGTTATAACACCTGAAGCGGAATGCTCAAAGTTGCCATCA 570
Query 475 AGCTCAAGAATCAAGAGAGGTTTTAGGCAGAGGTTTGGGTTGAGCAAGCAAGAGTTTCAC 534
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 571 AGCTCAAGAATCAAGAGAGGTTTTAGGCAGAGATTTGGGTTGAGCAAGCAAGAGTTTCAT 630
Query 535 CCTGGTCCCTCTGGCCAGTCAACATCTGCCAACCGAGGATGCAGCCCGTTGTTATCCGGT 594
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 631 CCTGGTCCATCTGGCCAGTCAACATCTGCTAACCGGGGATGCAGCCCGTTGTTGTCAGGT 690
Query 595 GTCATTCCAAGTGGTTTTGGATTGGAGAAAAGATTAAGTCGGAAGGCAGATACAATCAAT 654
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 691 GTCATTCCAAGTGGTTTTGGATTGGACAAAAGATTAAGTCGGAAGGCAGATACAATCAGT 750
Query 655 AAGAGGAAAGTTTATGGAGAAAGCAGTTCTAGCACCTCAGCTAGGGGGAAGAATGTAACA 714
|||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 751 AAGACAAAAGTTTACGGAGAAAGCAGTTCTAGCTCCTCAGCTAGGGGGAAGAATGTAACA 810
Query 715 GAAAC---ACCAGCTGAAGTTAGACGTCGCAGTTTTAATCCGAGAGGTTCTGTTTCAGAT 771
||| | ||||| |||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 811 GAACCTCCACCAGTTGAAGTGAGACGTCGTAGTTTTAATCCGAGAGGTTCTGTTTCTGAT 870
Query 772 AGTAGACAGGCTAGACACTGCATTTTGAATGATGACAACGATGTTGCTTCATTTGGGAGT 831
||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 871 AGTAGACGGGCTAGACACTGCATTTTGGATGATGACAACGATGTTGCTTCAGTTGGGAGT 930
Query 832 CAGAGATTGGCAGATAGAAGTAATAGTCGCATTAGATTCTCAAACCCTGGGAGTGGTAGA 891
|||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 931 CAGAGATTGGCAAATAGAAATAATAGTCGCATTAGA------------GGGAGTGGTAGA 978
Query 892 GAAGCTTTATCCTCTGTCACGGCAACAGAGATGTCTCCGACTGAAACATCAAACAATCTC 951
|| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 979 GACGGTTTATCCTCTGTCACGGCAGCAGAGATGTCTCAGACTGAAACATCAAACAATCTC 1038
Query 952 AATTCTCCTGTCTCTTTGGAGCTGTTCTCTGGTTTTCCAGAATTTGGCCCCCCTGGTTCC 1011
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1039 AATTCTCCTGTCTCTTTGGAGCTGTTCTCTGGTTTTCCAGAATTTGGCCTCTCTGGTTCC 1098
Query 1012 TTATTGAGTCAAGACAGTTTTCGCAGTTACAATTTAGATGGGATCTCGGAGATTTTGCCA 1071
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 1099 TTATTGAGTCATGACAGTTTTCGCAGTTATAATTTAGATGGGATCTCCGAGATTCTGCCA 1158
Query 1072 GAGCTTGATAGGATTGAACAAGATATCGAGCTTAATTATGAGGAGCTGCTTATCATGGAG 1131
|| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1159 GAACTTGATAGGATCGAACAAGATATCGAACTTAATTATGAGGATCTGCTTATCATGGAA 1218
Query 1132 ACAGGTTTACTTCTCGGTGGACTAAGCTTCCATGACCAACACCGAGACATGAGGCTAGAC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 ACAGGTTTACTTCTCGGTGGACTAAGCTTCCATGACCAACACCGAGACATGAGGCTAGAC 1278
Query 1192 ATCGATAACATGTCATATGAGGAACTATTAGCTCTTGAAGAGAGGATTGGTACAGTAAGC 1251
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1279 ATCGATAACATGTCATATGAGGAACTATTAGCTCTAGAAGAGAGGATTGGTACAGTAAGC 1338
Query 1252 ACTGCTCTCACAGAAGAAGCAATATCAAAGTGCTTGAAAACAAGCATCTATCAGATGAAA 1311
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1339 ACTGCTTTGACAGAAGAAGCAATATCAAAGTGCTTGAAAACAAGTATCTATCAGATGAAA 1398
Query 1312 CCTTTAACTTATGGGTCTATCACCAAAAGTCCTAGTGATCACAAGGAAGATGCCAAATGC 1371
||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1399 CCTTTGAGTTATGGGTCTATCACCAAAAGTCCTAGTGATAACAAGGAAGATGCCAAATGC 1458
Query 1372 AGCATCTGCCAGGAAGAGTATACAATAGGAGATGAAGTTGGGAGGCTACACTGTGAGCAC 1431
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1459 AGCATCTGCCAGGAAGAATATACGATTGGAGATGAAGTTGGGAGGCTACACTGTGAGCAC 1518
Query 1432 ACATACCATGTGAAGTGTGTGCAAGAGTGGTTGCGGATGAAGAGTTGGTGCCCAATCTGC 1491
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1519 ACATACCATGTGAAGTGTGTGCAAGAGTGGTTGCGGATAAAGAGTTGGTGCCCAATCTGC 1578
Query 1492 AAAGCCACTGCGGAAACCTCATCTAAATAACTGTCTTCTTCTTCTTCCTCGTT 1544
|||||||| || |||||||| |||||||||| |||||||||||||||||||||
Sbjct 1579 AAAGCCACAGCCGAAACCTCCTCTAAATAACCGTCTTCTTCTTCTTCCTCGTT 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5