BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944847
Length=580
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31360.1 | Symbols: | selenium binding | chr4:15221843-1522... 649 0.0
> AT4G31360.1 | Symbols: | selenium binding | chr4:15221843-15223627
FORWARD LENGTH=980
Length=980
Score = 649 bits (351), Expect = 0.0
Identities = 518/590 (88%), Gaps = 45/590 (8%)
Strand=Plus/Plus
Query 4 CTGTTGCTGTCCGTATAATGGCGCCGAGGAAGAGTAAGGCAGATGGTGAAGAAAAGGCGA 63
||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 86 CTGTTGCTGTCCGTACAATGCCGCCGAAGAAGAGTAAGGCAGATGGAGAAGAAAAGGCGA 145
Query 64 AACCTTTAACGACGACGGCGTCGTCTACAGTGACTCGGAGCATGGGCAGTCGAACTCGAA 123
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 146 AACCTTTAACGACGTTGGCGTCGTCTAGAGTGACTCGGAGCATGGACAGTCGAACTCGAA 205
Query 124 GTCAGACTCAACAAAACGGTGCTAAAGCGGCTGGATCCGCCACTAAGCCGGTGAAGCTAG 183
||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 206 GTCAGACTCAACAAAACGGTGCTAAAGCGGCTGGATCCGCCACTAAGCC------G---G 256
Query 184 CGTCCCCGAAGAAGGCGAAGAGGAAGAATTCAGCGA-T-----T--GAGA--C----TGg 229
|| |||||||||| ||||||||||||||||||| | | |||| | ||
Sbjct 257 CG---ACGAAGAAGGCTAAGAGGAAGAATTCAGCGATTGAGACTGGGAGAGCCAAGAAGG 313
Query 230 g--ag-agcca-a-gaag-ggaa-ag--a-aggaa---gttga--a-aagg--aag-agg 270
| || || | | |||| ||| || | ||||| ||||| | ||| || |||
Sbjct 314 GAAAGAAGGAAGAGGAAGTTGAAGAGCCAGAGGAAGCCGTTGAGGAGGAGGTTGAGAAGG 373
Query 271 aagagccagaggttgaggaTCCTACGAGAACGAAGATTGTTATAGAACACTGTAAACAAT 330
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 374 AAGAGCCAGAGGTTGAGGACCCTACGAGAACCAAGATTGTTATAGAACACTGTAAACAAT 433
Query 331 GCAATGCTTTCAAGACAAGGGCTATTCAGGTGAAGGAAGGTTTGGAGGGAGCTGTTCCTG 390
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 434 GCAATGCTTTCAAGACAAGAGCTATTCAGGTGAAGGAAGCTTTGGAGGGAGCTGTTCCTG 493
Query 391 GCGTCAATGTGACTCTGAATCCTGAAAAGCCAAGGCGGGGTTGCTTCGAGATCCGGGAGG 450
|||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 494 GCGTCACGGTGTCTCTTAATCCTGAAAAGCCAAGGCGGGGTTGCTTTGAGATCCGGGAGG 553
Query 451 AAGGTGGCGAAACATTCATCAGTCTTTTGGAGATGAAACGTCCATTTGCACCAATGAAGG 510
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AAGGTGGCCAAACATTCATCAGTCTTTTGGAGATGAAACGTCCATTTGCACCAATGAAGG 613
Query 511 CACTTGATATGGAAGAAGTCATCGAGGACATCATAAAGAAAATCAAATGA 560
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 614 CACTTGATATGGAAGAAGTCATCGAGGACATCATAAAGAAAGTCAAATGA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27879951585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5